FREUDENSTEIN, JOHN V.*, DIANA M. SENYO, AND MARK W. CHASE. Department of Biological Sciences, Kent State University, Kent OH 44242 and Royal Botanic Gardens, Kew, Richmond, Surrey TW9 3DS, UK. - Evolution and phylogenetic significance of a mitochondrial intron in Orchidaceae.
Molecular systematic studies have focused largely on examination of
DNA sequences of genes and spacers from the plastid genome, and of
highly repeated genes or spacers from the nuclear genome. Additional
sources of data are available, however, including mitochondrial
sequences and single-copy nuclear sequences. Sequences for the
nad1b-c mitochondrial intron were obtained via automated
fluorescent sequencing from species representing numerous tribes from
across the five traditional subfamilies of Orchidaceae. The sequences
show a relatively low rate of base substitution -- less than that seen
for the plastid gene rbcL -- but exhibit a large amount of
length variation, ranging from approximately 1600 bp in
Neuwiedia to 900 bp in Maxillaria. This combination of
features means that sequence alignment is fairly straightforward, and
provides an excellent opportunity to study the evolution of intron
length. Insertions and deletions (indels) are distributed throughout
the intron and often provide useful synapomorphies to unite taxa,
although some indels show homoplasy. The basic insertion pattern
appears in most cases to be a direct duplication of short adjacent
sequences (1-10 bp). In some cases, much larger insertions of over
100 bp were observed. The data set, including both base changes and
indels, is useful for cladistic analysis of the family; the patterns
observed agree in large part with those from other molecular data sets
and from morphology, and provide another tool for building a stable
classification of the family.
Key words: cladistics, DNA, introns, Orchidaceae