OCHOTERENA-BOOTH, HELGA* AND KEVIN C. NIXON. L.H.Bailey Hortorium, 462 Mann Library, Cornell University, Ithaca, NY 14853. - Local and global parsimony: the analysis of large data sets from the family Rubiaceae.
Ribulose-biphosphate carboxylase (rbcL) sequences representing
almost all the tribes currently recognized in Rubiaceae plus ca. 260
other asterid genera are available in GenBank. Cladistic analyses of
subsets of these data have been published addressing important aspects
of the classification of Rubiaceae. Investigation of all these
sequences in larger analyses that allow us to test global maximum
parsimony is now possible due to the existence of highly efficient
software (Nona for Windows NT: Goloboff, 1997). The present study
compares the results from rbcL partial analyses (local
parsimony) of infra-familiar taxa in Rubiaceae to those with: 1.- 146
sequences of Rubiaceae plus 3 asterid outgroups, and 2.- the 149-taxon
Rubiaceae matrix plus 260 asterid genera and 30 tricolpate outgroups.
The 149-taxon analyses contained 405 potentially informative sites and
yielded 49,248 equally most parsimonious trees (L=2,377, Ci= 0.26,
Ri=0.76). The 439-taxon analyses contained 637 potentially informative
sites and yielded 50,000 (filled memory) equally most parsimonious
trees (L=8,363, Ci=0.14, Ri=0.73). The gross topology of the consensus
trees in the three groups of analyses was similar, but the position of
some taxa differed. In the context of rbcL sequences, the
larger sample provided more rigorous tests of monophyly for particular
clades. One problem of increasing the number of taxa for a particular
kind of data (rbcL in this case) is the proportional reduction
of potentially informative characters per taxon: in these analyses,
2.72 (for 149 taxa), 1.45 (for 439 taxa), and 0.91 (for 910 taxa; not
reported here). At the same time, the larger sample resulted in less
resolution within the main clades. Because of the possibility of
conducting analyses with relatively large data sets, decisions on
sample size should be made on the basis of the aims of the research
rather than on software/time limitations due to a preferred computer
platform.
Key words: Asteriidae, cladistics, classification, Local and global parsimony, rbcL, Rubiaceae