PUBLICATIONS

Wren JD and Conway T "Meta-analysis of Biological Regulation and Response" (submitted) Supplementary Information

Chang, D.E., D. Smalley, D. L. Tucker, M. P. Leatham, W. E. Norris, S. J. Stevenson, A. B. Anderson, J. E. Grissom, D. C. Laux, P. S. Cohen, and T. Conway. Carbon nutrition of Escherichia coli in the mouse intestine. 2004. Proc. Nat. Acad. Sci. 101: 7427-7432 .pdf PubMed

Wren JD, Yao M, Langer M and Conway T "Simulated Annealing of Microarray Data Reduces Noise and Enables Cross-Experimental Comparisons" DNA and Cell Biology 2004 (in press)

Bausch, C., M. Ramsey, and T. Conway. 2004. Transcriptional Organization and Regulation of the L-Idonic Acid Pathway (GntII System) In Escherichia coli. J. Bacteriol. 186: 1388-97. .pdf PubMed

Miranda, R. L., T. Conway, M. P. Leatham, D. E. Chang, D. L. Tucker, W. E. Norris, J. H. Allen, S. J. Stevenson, D. C. Laux, and P. S. Cohen. 2004. Glycolytic and gluconeogenic growth of Escherichia coli O157:H7 (EDL933) and E. coli K-12 (MG1655) in the mouse intestine. Infect. Immun. 72: 1666-76. .pdf PubMed

Ma , Z., S. Gong, R. Hope, D. L.Tucker, T. Conway, and J. W Foster. 2003. GadE (YhiE) activates glutamate decarboxylase-dependent acid resistance in Escherichia coli K12. Mol. Microbiol. 49: 1309-1320 .pdf PubMed

Tucker, A. E., I. I. Salles, D. E. Voth, W. Ortiz-Leduc, H. Wang, I. Dozmorov, M. Centola, and J. D. Ballard. 2003. Decreased glycogen synthase kinase 3-beta levels and related physiological changes in Bacillus anthracis lethal toxin-treated macrophages. Cell. Microbiol. 5: 523–32. .pdf PubMed

Wanken, A., T. Conway, and K. A. Eaton. 2003. The Entner-Doudoroff pathway has little effect on Helicobacter pylori colonization of mice. Infect. Immun. 71: 2920-2923 .pdf PubMed

Tucker, D. L., N. Tucker, Z. Ma, J. W. Foster, R. L. Miranda, P. S. Cohen, and T. Conway. 2003. Genes of the GadX-GadW regulon in E. coli. J. Bacteriol. 185: 3190-3201. .pdf PubMed

Wei, N., L. Gruenwald, and T. Conway. 2003. Analyzing Escherichia coli gene expression data by a multilayer adjusted tree organizing map. The 3rd IEEE Symposium on Bioinformatics and Bioengineering, Bethesda MD, March 10-12, 2003, pp. 289-296.

Møller, A., T. Conway, P. Nuijten, K. A. Krogfelt and P. S. Cohen. 2003. An Escherichia coli MG1655 lipopolysaccharide deep-rough core mutant grows and survives in mouse cecal mucus, but fails to colonize the mouse large intestine. Infect. Immun. 71: 2142-2152. .pdf PubMed

Smalley, D. J., M. Whiteley, and T. Conway. 2003. In search of the minimal E. coli genome. Trends Microbiol. 11: 6-8. .pdf PubMed

Wolfe, A. J., D.E. Chang, J. D. Walker, J. E. Seitz-Partridge, M. D. Vidaurri, B. Pruess, M. C. Henk, J. C. Larkin, and T. Conway. 2003. Evidence that acetyl phosphate functions as a global signal during biofilm development. Mol. Microbiol. 48: 977-988. .pdf PubMed

Conway, T. and G. Schoolnik. 2003. Microarray expression profiling: capturing a genome-wide portrait of the transcriptome. Mol. Microbiol. 47: 879-889. .pdf PubMed

Ma, Z., H. Richard, D. L. Tucker, T. Conway, and J. W. Foster. 2002. Collaborative regulation of Escherichia coli glutamate-dependent acid resistance by two AraC-like regulators, GadX and GadW. J. Bacteriol. 184: 7001-7012. .pdf PubMed

Tucker, D. L., N. Tucker, T. Conway. 2002. Gene expression profiling of the pH response in E. coli. J. Bacteriol. 183: 6551-6558. .pdf PubMed

Santosa, B., T. Conway, and T. B. Trafalis. 2002. Knowledge based-clustering and application of multi-class SVM for gene expression analysis. Conference paper: ANNIE2002, Smart Engineering System Design, November 10-13, 2002, St. Louis, MO; Publication: IN Intelligent Engineering Systems Through Artificial Neural Networks, Dagli, C. H., A. L. Buczak, J. Ghosh, M. J. Embrchts, O. Ersoy, S. W. Dercel (eds.), ASME Press 12: 391-395.

Chang, D.E., D. J. Smalley, and T. Conway. 2002. Gene expression profiling of E. coli growth transitions: an expanded stringent response model. Mol Microbiol 45: 289-306. .pdf PubMed

Conway, T., B. Kraus, D. L. Tucker, D. J. Smalley, A. F. Dorman, and L. McKibben. 2002. DNA array analysis in a microsoft windows environment. Biotechniques. 32: 110-119. .pdf PubMed

Whiteley M., M. G. Bangera , R. E. Bumgarner , M. R. Parsek , G. M. Teitzel , S. Lory , E. P. Greenberg . 2001. Gene expression in Pseudomonas aeruginosa biofilms. Nature. 413: 860-4. .pdf PubMed

Tao, H., C. Bausch, C. Richmond, F. R. Blattner, and T. Conway. 1999. Functional genomics: expression analysis of Escherichia coli growing on minimal and rich media. J. Bacteriol. 181: 6425-6440. .pdf PubMed

Matsuno, K., T. Blais, A. W. Serio, T. Conway, T. M. Henkin, and A. L. Sonenshein. 1999. Metabolic imbalance and sporulation in an isocitrate dehydrogenase mutant of Bacillus subtilis. J. Bacteriol. 181: 3382-3291. .pdf PubMed

Bausch, C., N. Peekhaus, C. Utz, T. Blais, E. Murray, T. Lowary, and T. Conway. 1998. Sequence Analysis of the GntII (Subsidiary) System for Gluconate Metabolism Reveals a Novel Pathway for L-Idonic Acid Catabolism in E. coli. J. Bacteriol. 180: 3704-3710. .pdf PubMed

Peekhaus, N. and T. Conway. 1998. What's for Dinner? Entner-Doudoroff metabolism in Escherichia coli. (A mini-review) J. Bacteriol. 180: 3495-3502. .pdf PubMed

Peekhaus, N. and T. Conway. 1998. Positive and negative transcriptional regulation of the gntT gene of the gluconate regulon of Escherichia coli by GntR and the CRP-cAMP complex. J. Bacteriol. 180: 1777-1785. .pdf PubMed

Conway, T. 1992. The Entner-Doudoroff pathway: History, physiology, and molecular biology. FEMS Microbiol. Rev. 103: 1-27. .pdf PubMed