PRINCIPLES AND TECHNIQUES OF TRANSMISSION ELECTRON MICROSCOPY
BOT/MICRO/ZOOL 5364 - Tentative Syllabus - Fall 2002
Instructor: Scott D. Russell, Botany-Microbiology Professor, and Director of Noble Electron Microscopy Lab
Lecture: 8:30 - 9:20 am Monday Wednesday Friday
Laboratory: To Be Arranged
References:
|
DATE |
LECTURE |
LABORATORY |
READINGS (Bozzola & Russell, 1999) |
|
Aug 26 |
Introduction to TEM, biological specimen preparation |
Fixation of tissue, laboratory procedures |
2-14 [historical perspective]; 616-640 [safety] |
|
Aug 28 |
Specimen preparation (fixation and buffers) |
Dehydrate and embed tissue |
16-47 [biological specimen preparation] |
|
Aug 30 |
Specimen preparation (dehydration and embedding) |
|
|
|
Sep 2 |
Ultramicrotomy, ultramicrotome design, knives |
Introduction to Zeiss 10 starts1 |
72-92; 97-109 [ultramicrotomy] |
|
Sep 4 |
Intro to TEM instrument, instrument design |
Make glass knives and cut thick sections |
163-180 [TEM instrument] |
|
Sep 6 |
vacuum pumps, e- sources |
Cut ultrathin sections |
180-188 [vacuum pumps] |
|
Sep 9 |
Labor Day (no class) |
* |
64-107 [sectioning]; handout on MT-2 ultramicrotome |
|
Sep 11 |
e- behavior |
* |
148-162 [light, electrons & lenses] |
|
Sep 13 |
Electron optics I |
Staining |
120-130 [staining]; handout on electron optics |
|
Sep 16 |
Electron optics II |
* |
188-201 [alignment & operation] |
|
Sep 18 |
Electron optics III |
* |
|
|
Sep 20 |
EM photography |
240-261 [photography] |
|
|
Sep 23 |
Support films, shadow casting, negative staining |
Support films, shadow cast, negative stain2 |
130-147 [negative staining, shadow casting] |
|
Sep 25 |
Digital imaging, image processing, feature analysis |
Digital imaging & feature analysis |
414-441 [digital imaging and image processing] |
|
Sep 27 |
Feature analysis, discuss student prospectus |
Prospectus of individual projects due |
|
|
Sep 30 |
Specimen-beam interactions, scanning beam technology |
Multiple signal acquisition, JEOL 2000 |
202-231 [scanning] |
|
Oct 2 |
X-ray spectroscopy |
X-ray spectroscopy, JEOL 20002 |
368-385 [x-ray spectroscopy] |
|
Oct 4 |
Intermediate and High Voltage EM |
|
396-405 [IVEM and HVEM] |
|
Oct 7 |
Freezing technology, freeze-substitution |
Rapid-freezing, start freeze-substitution3** |
Handout: Gilkey and Staehelin, 1986 |
|
Oct 9 |
Freeze-substitution, freeze-drying, freeze-fracture |
Freeze fracture3 |
342-366 [freeze-fracture] |
|
Oct 11 |
Dallas football weekend |
|
|
|
Oct 14 |
E.M. histochemistry I |
Acid phosphatase localization3 |
282-291 [enzyme cytochemistry] |
|
Oct 16 |
E.M. histochemistry II |
* |
292-308 [autoradiography]; 310-318 [other] |
|
Oct 18 |
E.M. histochemistry III |
|
406-413 [tracers] |
|
Oct 21 |
Surface labeling & Immunological EM I |
Colloidal gold2 |
262-280 [immunocytochemistry] |
|
Oct 23 |
Immunological EM II |
Cryoultramicrotomy |
Handout on immunocytochemistry |
|
Oct 25 |
Cryoultramicrotomy |
|
109-118 |
|
Oct 28 |
Stereology & morphometry I-sampling |
Quantitative cytology2 |
320-340 [quantitative electron microscopy] |
|
Oct 30 |
Stereology & morphometry II-serial reconstruction |
LM/EM correlation, 3-D reconstruct2 |
Handout on stereology |
|
Nov 1 |
Three-dimensional reconstruction |
Progress reports due |
Handout on 3-D reconstruction |
|
Nov 4 |
Electron diffraction |
Electron diffraction |
386-395 [electron diffraction] |
|
Nov 6 |
Interpretation of electron micrographs |
Micrographs & artifacts |
442-475 [micrograph interpretation] |
|
Nov 8 |
Survey of biological ultrastructure |
|
476-614 [atlas of ultrastructure images] |
|
TBA |
Preparing illustrations and posters |
Preparing posters |
Handouts on posters |
|
Dec 13 |
Presentation of student research posters |
Hand-in EMs of standard materials |
|
FINAL EXAMINATION: Wednesday, December 18, 2002, 10:30 am-12:30 PM
*Open laboratory periods may be used for preparation of specimens, ultramicrotomy, microscope use and photography. Instructors will be present during laboratory hours
**Checkout on the Zeiss 10a begins
1Microscope use outside of regularly scheduled lab periods begins
2Group experiments (1 day project); these are due 1 week after the experiment
3Group experiments (>1 day project); these are due 2 weeks after the experiment
OU Administrative pages: