PRINCIPLES AND TECHNIQUES OF TRANSMISSION ELECTRON MICROSCOPY

BOT/MICRO/ZOOL 5364 - Tentative Syllabus - Fall 2002
Web site:
http://www.ou.edu/research/electron/bmz5364/

Instructor: Scott D. Russell, Botany-Microbiology Professor, and Director of Noble Electron Microscopy Lab

Office: 223 George Lynn Cross Hall   Lab: 143 GLCH 325-6234 E-mail: srussell@ou.edu
Electron Microscopist: Greg Strout, 214 Noble Microscopy Lab 325-4391 E-mail: gstrout@ou.edu

Lecture: 8:30 - 9:20 am Monday Wednesday Friday
Laboratory: To Be Arranged

References:

DATE

LECTURE

LABORATORY

READINGS (Bozzola & Russell, 1999)

Aug 26

Introduction to TEM, biological specimen preparation

Fixation of tissue, laboratory procedures

2-14 [historical perspective]; 616-640 [safety]

Aug 28

Specimen preparation (fixation and buffers)

Dehydrate and embed tissue

16-47 [biological specimen preparation]

Aug 30

Specimen preparation (dehydration and embedding)

 

 

Sep 2

Ultramicrotomy, ultramicrotome design, knives

Introduction to Zeiss 10 starts1

72-92; 97-109 [ultramicrotomy]

Sep 4

Intro to TEM instrument, instrument design

Make glass knives and cut thick sections

163-180 [TEM instrument]

Sep 6

vacuum pumps, e- sources

Cut ultrathin sections

180-188 [vacuum pumps]

Sep 9

Labor Day (no class)

*

64-107 [sectioning]; handout on MT-2 ultramicrotome

Sep 11

e- behavior

*

148-162 [light, electrons & lenses]

Sep 13

Electron optics I

Staining

120-130 [staining]; handout on electron optics

Sep 16

Electron optics II

*

188-201 [alignment & operation]

Sep 18

Electron optics III

*

 

Sep 20

EM photography

 

 240-261 [photography]

Sep 23

Support films, shadow casting, negative staining

Support films, shadow cast, negative stain2

130-147 [negative staining, shadow casting]

Sep 25

Digital imaging, image processing, feature analysis

Digital imaging & feature analysis

414-441 [digital imaging and image processing]

Sep 27

Feature analysis, discuss student prospectus

Prospectus of individual projects due

 

Sep 30

Specimen-beam interactions, scanning beam technology

Multiple signal acquisition, JEOL 2000

202-231 [scanning]

Oct 2

X-ray spectroscopy

X-ray spectroscopy, JEOL 20002

368-385 [x-ray spectroscopy]

Oct 4

Intermediate and High Voltage EM

 

396-405 [IVEM and HVEM]

Oct 7

Freezing technology, freeze-substitution

Rapid-freezing, start freeze-substitution3**

Handout: Gilkey and Staehelin, 1986

Oct 9

Freeze-substitution, freeze-drying, freeze-fracture

Freeze fracture3

342-366 [freeze-fracture]

Oct 11

Dallas football weekend

 

 

Oct 14

E.M. histochemistry I

Acid phosphatase localization3

282-291 [enzyme cytochemistry]

Oct 16

E.M. histochemistry II

*

292-308 [autoradiography]; 310-318 [other]

Oct 18

E.M. histochemistry III

 

406-413 [tracers]

Oct 21

Surface labeling & Immunological EM I

Colloidal gold2

262-280 [immunocytochemistry]

Oct 23

Immunological EM II

Cryoultramicrotomy

Handout on immunocytochemistry

Oct 25

Cryoultramicrotomy

 

109-118

Oct 28

Stereology & morphometry I-sampling

Quantitative cytology2

320-340 [quantitative electron microscopy]

Oct 30

Stereology & morphometry II-serial reconstruction

LM/EM correlation, 3-D reconstruct2

Handout on stereology

Nov 1

Three-dimensional reconstruction

Progress reports due

Handout on 3-D reconstruction

Nov 4

Electron diffraction

Electron diffraction

386-395 [electron diffraction]

Nov 6

Interpretation of electron micrographs

Micrographs & artifacts

442-475 [micrograph interpretation]

Nov 8

Survey of biological ultrastructure

 

476-614 [atlas of ultrastructure images]

TBA

Preparing illustrations and posters

Preparing posters

Handouts on posters

Dec 13

Presentation of student research posters

Hand-in EMs of standard materials

 

FINAL EXAMINATION: Wednesday, December 18, 2002, 10:30 am-12:30 PM

*Open laboratory periods may be used for preparation of specimens, ultramicrotomy, microscope use and photography. Instructors will be present during laboratory hours
**Checkout on the Zeiss 10a begins
1Microscope use outside of regularly scheduled lab periods begins
2Group experiments (1 day project); these are due 1 week after the experiment
3Group experiments (>1 day project); these are due 2 weeks after the experiment OU Administrative pages: