J. H. Choi, Y. Li, J. Guo, L. Pei, T. A. Rauch, R. S. Kramer, S. L. Macmil, G. B. Wiley, L. B. Bennett, J. L. Schnabel, K. H. Taylor, S. Kim, D. Xu, A. Sreekumar, G. P. Pfeifer, B. A. Roe, C. W. Caldwell, K. N. Bhalla, H. Shi, 2010. Genome-wide DNA methylation maps in follicular lymphoma cells determined by methylation-enriched bisulfite sequencing.PLoS One. 5: . PubMed

S. C. Fernando, H. T. Purvis, F. Z. Najar, L. O. Sukharnikov, C. R. Krehbiel, T. G. Nagaraja, B. A. Roe, U. Desilva, 2010. Rumen microbial population dynamics during adaptation to a high-grain diet.Appl Environ Microbiol. 76: 7482-90. PubMed

J. E. Stajich, S. K. Wilke, D. Ahrén, C. H. Au, B. W. Birren, M. Borodovsky, C. Burns, B. Canbäck, L. A. Casselton, C. K. Cheng, J. Deng, F. S. Dietrich, D. C. Fargo, M. L. Farman, A. C. Gathman, J. Goldberg, R. Guigó, P. J. Hoegger, J. B. Hooker, A. Huggins, T. Y. James, T. Kamada, S. Kilaru, C. Kodira, U. Kües, D. Kupfer, H. S. Kwan, A. Lomsadze, W. Li, W. W. Lilly, L. J. Ma, A. J. Mackey, G. Manning, F. Martin, H. Muraguchi, D. O. Natvig, H. Palmerini, M. A. Ramesh, C. J. Rehmeyer, B. A. Roe, N. Shenoy, M. Stanke, V. Ter-Hovhannisyan, A. Tunlid, R. Velagapudi, T. J. Vision, Q. Zeng, M. E. Zolan, P. J. Pukkila, 2010. Insights into evolution of multicellular fungi from the assembled chromosomes of the mushroom Coprinopsis cinerea (Coprinus cinereus).Proc Natl Acad Sci U S A. 107: 11889-94. PubMed

J. S. Ramsey, D. S. Rider, T. K. Walsh, M. De Vos, K. H. Gordon, L. Ponnala, S. L. Macmil, B. A. Roe, G. Jander, 2010. Comparative analysis of detoxification enzymes in Acyrthosiphon pisum and Myzus persicae.Insect Mol Biol. 19 Suppl 2: 155-64. PubMed

M. J. Roossinck, P. Saha, G. B. Wiley, J. Quan, J. D. White, H. Lai, F. Chavarría, G. Shen, B. A. Roe, 2010. Ecogenomics: using massively parallel pyrosequencing to understand virus ecology.Mol Ecol. 19 Suppl 1: 81-8. PubMed

P. S. Coburn, A. S. Baghdayan, N. Craig, A. Burroughs, P. Tendolkar, K. Miller, F. Z. Najar, B. A. Roe, N. Shankar, 2010. A novel conjugative plasmid from Enterococcus faecalis E99 enhances resistance to ultraviolet radiation.Plasmid. 64: 18-25. PubMed

J. Matsumoto, K. Dewar, J. Wasserscheid, G. B. Wiley, S. L. Macmil, B. A. Roe, R. W. Zeller, Y. Satou, K. E. Hastings, 2010. High-throughput sequence analysis of Ciona intestinalis SL trans-spliced mRNAs: alternative expression modes and gene function correlates.Genome Res. 20: 636-45. PubMed

J. Matts, G. Jagadeeswaran, B. A. Roe, R. Sunkar, 2010. Identification of microRNAs and their targets in switchgrass, a model biofuel plant species.J Plant Physiol. 167: 896-904. PubMed

S. Zeng, G. Xiao, J. Guo, Z. Fei, Y. Xu, B. A. Roe, Y. Wang, 2010. Development of a EST dataset and characterization of EST-SSRs in a traditional Chinese medicinal plant, Epimedium sagittatum (Sieb. Et Zucc.) Maxim.BMC Genomics. 11: 94. PubMed


Y. Jiao, X. Jin, J. Yan, F. Jiao, X. Li, B. A. Roe, H. W. Jarrett, W. Gu, 2009. An insertion of intracisternal A-particle retrotransposon in a novel member of the phosphoglycerate mutase family in the lew allele of mutant mice.Genes Genet Syst. 84: 327-34. PubMed

F. D. Guerrero, S. E. Dowd, A. Djikeng, G. Wiley, S. Macmil, L. Saldivar, F. Najar, B. A. Roe, 2009. A database of expressed genes from Cochliomyia hominivorax (Diptera: Calliphoridae).J Med Entomol. 46: 1109-16. PubMed

N. Youssef, C. S. Sheik, L. R. Krumholz, F. Z. Najar, B. A. Roe, M. S. Elshahed, 2009. Comparison of species richness estimates obtained using nearly complete fragments and simulated pyrosequencing-generated fragments in 16S rRNA gene-based environmental surveys.Appl Environ Microbiol. 75: 5227-36. PubMed

G. Jagadeeswaran, Y. Zheng, Y. F. Li, L. I. Shukla, J. Matts, P. Hoyt, S. L. Macmil, G. B. Wiley, B. A. Roe, W. Zhang, R. Sunkar, 2009. Cloning and characterization of small RNAs from Medicago truncatula reveals four novel legume-specific microRNA families.New Phytol. 184: 85-98. PubMed

L. Jacobsen, L. Durso, T. Conway, K. W. Nickerson, 2009. Escherichia coli O157:H7 and other E. coli strains share physiological properties associated with intestinal colonization.Appl Environ Microbiol. 75: 4633-5. PubMed

M. P. Leatham, S. Banerjee, S. M. Autieri, R. Mercado-Lubo, T. Conway, P. S. Cohen, 2009. Precolonized human commensal Escherichia coli strains serve as a barrier to E. coli O157:H7 growth in the streptomycin-treated mouse intestine.Infect Immun. 77: 2876-86. PubMed

G. Wiley, S. Macmil, C. Qu, P. Wang, Y. Xing, D. White, J. Li, J. D. White, A. Domingo, B. A. Roe, 2009. Methods for generating shotgun and mixed shotgun/paired-end libraries for the 454 DNA sequencer.Curr Protoc Hum Genet. Chapter 18: Unit18.1. PubMed

F. D. Guerrero, S. E. Dowd, Y. Sun, L. Saldivar, G. B. Wiley, S. L. Macmil, F. Najar, B. A. Roe, L. D. Foil, 2009. Microarray analysis of female- and larval-specific gene expression in the horn fly (Diptera: Muscidae).J Med Entomol. 46: 257-70. PubMed

M. N. Aljamali, L. Hern, D. Kupfer, S. Downard, S. So, B. A. Roe, J. R. Sauer, R. C. Essenberg, 2009. Transcriptome analysis of the salivary glands of the female tick Amblyomma americanum (Acari: Ixodidae).Insect Mol Biol. 18: 129-54. PubMed

A. M. Reddy, Y. Zheng, G. Jagadeeswaran, S. L. Macmil, W. B. Graham, B. A. Roe, U. Desilva, W. Zhang, R. Sunkar, 2009. Cloning, characterization and expression analysis of porcine microRNAs.BMC Genomics. 10: 65. PubMed

R. Mercado-Lubo, M. P. Leatham, T. Conway, P. S. Cohen, 2009. Salmonella enterica serovar Typhimurium mutants unable to convert malate to pyruvate and oxaloacetate are avirulent and immunogenic in BALB/c mice.Infect Immun. 77: 1397-405. PubMed

V. Muthukumar, U. Melcher, M. Pierce, G. B. Wiley, B. A. Roe, M. W. Palmer, V. Thapa, A. Ali, T. Ding, 2009. Non-cultivated plants of the Tallgrass Prairie Preserve of northeastern Oklahoma frequently contain virus-like sequences in particulate fractions.Virus Res. 141: 169-73. PubMed

T. A. Snider, A. J. Fabich, T. Conway, K. D. Clinkenbeard, 2009. E. coli O157:H7 catabolism of intestinal mucin-derived carbohydrates and colonization.Vet Microbiol. 136: 150-4. PubMed

P. J. Turnbaugh, M. Hamady, T. Yatsunenko, B. L. Cantarel, A. Duncan, R. E. Ley, M. L. Sogin, W. J. Jones, B. A. Roe, J. P. Affourtit, M. Egholm, B. Henrissat, A. C. Heath, R. Knight, J. I. Gordon, 2009. A core gut microbiome in obese and lean twins.Nature. 457: 480-4. PubMed


R. Y. Tito, S. Macmil, G. Wiley, F. Najar, L. Cleeland, C. Qu, P. Wang, F. Romagne, S. Leonard, A. J. Ruiz, K. Reinhard, B. A. Roe, C. M. Lewis, 2008. Phylotyping and functional analysis of two ancient human microbiomes.PLoS One. 3: e3703. PubMed

A. Wawrzynski, T. Ashfield, N. W. Chen, J. Mammadov, A. Nguyen, R. Podicheti, S. B. Cannon, V. Thareau, C. Ameline-Torregrosa, E. Cannon, B. Chacko, A. Couloux, A. Dalwani, R. Denny, S. Deshpande, A. N. Egan, N. Glover, S. Howell, D. Ilut, H. Lai, S. M. Del Campo, M. Metcalf, M. O'Bleness, B. E. Pfeil, M. B. Ratnaparkhe, S. Samain, I. Sanders, B. Ségurens, M. Sévignac, S. Sherman-Broyles, D. M. Tucker, J. Yi, J. J. Doyle, V. Geffroy, B. A. Roe, M. A. Maroof, N. D. Young, R. W. Innes, 2008. Replication of nonautonomous retroelements in soybean appears to be both recent and common.Plant Physiol. 148: 1760-71. PubMed

Y. Satou, K. Mineta, M. Ogasawara, Y. Sasakura, E. Shoguchi, K. Ueno, L. Yamada, J. Matsumoto, J. Wasserscheid, K. Dewar, G. B. Wiley, S. L. Macmil, B. A. Roe, R. W. Zeller, K. E. Hastings, P. Lemaire, E. Lindquist, T. Endo, K. Hotta, K. Inaba, 2008. Improved genome assembly and evidence-based global gene model set for the chordate Ciona intestinalis: new insight into intron and operon populations.Genome Biol. 9: R152. PubMed

R. W. Innes, C. Ameline-Torregrosa, T. Ashfield, E. Cannon, S. B. Cannon, B. Chacko, N. W. Chen, A. Couloux, A. Dalwani, R. Denny, S. Deshpande, A. N. Egan, N. Glover, C. S. Hans, S. Howell, D. Ilut, S. Jackson, H. Lai, J. Mammadov, S. M. Del Campo, M. Metcalf, A. Nguyen, M. O'Bleness, B. E. Pfeil, R. Podicheti, M. B. Ratnaparkhe, S. Samain, I. Sanders, B. Ségurens, M. Sévignac, S. Sherman-Broyles, V. Thareau, D. M. Tucker, J. Walling, A. Wawrzynski, J. Yi, J. J. Doyle, V. Geffroy, B. A. Roe, M. A. Maroof, N. D. Young, 2008. Differential accumulation of retroelements and diversification of NB-LRR disease resistance genes in duplicated regions following polyploidy in the ancestor of soybean.Plant Physiol. 148: 1740-59. PubMed

W. M. McShan, J. J. Ferretti, T. Karasawa, A. N. Suvorov, S. Lin, B. Qin, H. Jia, S. Kenton, F. Najar, H. Wu, J. Scott, B. A. Roe, D. J. Savic, 2008. Genome sequence of a nephritogenic and highly transformable M49 strain of Streptococcus pyogenes.J Bacteriol. 190: 7773-85. PubMed

S. Yang, M. Gao, C. Xu, J. Gao, S. Deshpande, S. Lin, B. A. Roe, H. Zhu, 2008. Alfalfa benefits from Medicago truncatula: the RCT1 gene from M. truncatula confers broad-spectrum resistance to anthracnose in alfalfa.Proc Natl Acad Sci U S A. 105: 12164-9. PubMed

M. S. Elshahed, N. H. Youssef, A. M. Spain, C. Sheik, F. Z. Najar, L. O. Sukharnikov, B. A. Roe, J. P. Davis, P. D. Schloss, V. L. Bailey, L. R. Krumholz, 2008. Novelty and uniqueness patterns of rare members of the soil biosphere.Appl Environ Microbiol. 74: 5422-8. PubMed

U. Melcher, V. Muthukumar, G. B. Wiley, B. E. Min, M. W. Palmer, J. Verchot-Lubicz, A. Ali, R. S. Nelson, B. A. Roe, V. Thapa, M. L. Pierce, 2008. Evidence for novel viruses by analysis of nucleic acids in virus-like particle fractions from Ambrosia psilostachya.J Virol Methods. 152: 49-55. PubMed

P. N. Rajesh, M. O'Bleness, B. A. Roe, F. J. Muehlbauer, 2008. Analysis of genome organization, composition and microsynteny using 500 kb BAC sequences in chickpea.Theor Appl Genet. 117: 449-58. PubMed

M. F. Traxler, S. M. Summers, H. T. Nguyen, V. M. Zacharia, G. A. Hightower, J. T. Smith, T. Conway, 2008. The global, ppGpp-mediated stringent response to amino acid starvation in Escherichia coli.Mol Microbiol. 68: 1128-48. PubMed

S. A. Jones, M. Jorgensen, F. Z. Chowdhury, R. Rodgers, J. Hartline, M. P. Leatham, C. Struve, K. A. Krogfelt, P. S. Cohen, T. Conway, 2008. Glycogen and maltose utilization by Escherichia coli O157:H7 in the mouse intestine.Infect Immun. 76: 2531-40. PubMed

Y. Jiao, X. Jin, J. Yan, C. Zhang, F. Jiao, X. Li, B. A. Roe, D. B. Mount, W. Gu, 2008. A deletion mutation in Slc12a6 is associated with neuromuscular disease in gaxp mice.Genomics. 91: 407-14. PubMed

R. C. De Lisle, W. Xu, B. A. Roe, D. Ziemer, 2008. Effects of Muclin (Dmbt1) deficiency on the gastrointestinal system.Am J Physiol Gastrointest Liver Physiol. 294: G717-27. PubMed

A. J. Fabich, S. A. Jones, F. Z. Chowdhury, A. Cernosek, A. Anderson, D. Smalley, J. W. McHargue, G. A. Hightower, J. T. Smith, S. M. Autieri, M. P. Leatham, J. J. Lins, R. L. Allen, D. C. Laux, P. S. Cohen, T. Conway, 2008. Comparison of carbon nutrition for pathogenic and commensal Escherichia coli strains in the mouse intestine.Infect Immun. 76: 1143-52. PubMed

R. Mercado-Lubo, E. J. Gauger, M. P. Leatham, T. Conway, P. S. Cohen, 2008. A Salmonella enterica serovar typhimurium succinate dehydrogenase/fumarate reductase double mutant is avirulent and immunogenic in BALB/c mice.Infect Immun. 76: 1128-34. PubMed


A. Siepel, M. Diekhans, B. Brejová, L. Langton, M. Stevens, C. L. Comstock, C. Davis, B. Ewing, S. Oommen, C. Lau, H. C. Yu, J. Li, B. A. Roe, P. Green, D. S. Gerhard, G. Temple, D. Haussler, M. R. Brent, 2007. Targeted discovery of novel human exons by comparative genomics.Genome Res. 17: 1763-73. PubMed

S. Yang, M. Gao, S. Deshpande, S. Lin, B. A. Roe, H. Zhu, 2007. Genetic and physical localization of an anthracnose resistance gene in Medicago truncatula.Theor Appl Genet. 116: 45-52. PubMed

J. A. Schlueter, J. Y. Lin, S. D. Schlueter, I. F. Vasylenko-Sanders, S. Deshpande, J. Yi, M. O'Bleness, B. A. Roe, R. T. Nelson, B. E. Scheffler, S. A. Jackson, R. C. Shoemaker, 2007. Gene duplication and paleopolyploidy in soybean and the implications for whole genome sequencing.BMC Genomics. 8: 330. PubMed

S. M. Autieri, J. J. Lins, M. P. Leatham, D. C. Laux, T. Conway, P. S. Cohen, 2007. L-fucose stimulates utilization of D-ribose by Escherichia coli MG1655 DeltafucAO and E. coli Nissle 1917 DeltafucAO mutants in the mouse intestine and in M9 minimal medium.Infect Immun. 75: 5465-75. PubMed

S. A. Jones, F. Z. Chowdhury, A. J. Fabich, A. Anderson, D. M. Schreiner, A. L. House, S. M. Autieri, M. P. Leatham, J. J. Lins, M. Jorgensen, P. S. Cohen, T. Conway, 2007. Respiration of Escherichia coli in the mouse intestine.Infect Immun. 75: 4891-9. PubMed

A. M. Spain, A. D. Peacock, J. D. Istok, M. S. Elshahed, F. Z. Najar, B. A. Roe, D. C. White, L. R. Krumholz, 2007. Identification and isolation of a Castellaniella species important during biostimulation of an acidic nitrate- and uranium-contaminated aquifer.Appl Environ Microbiol. 73: 4892-904. PubMed

M. S. Elshahed, N. H. Youssef, Q. Luo, F. Z. Najar, B. A. Roe, T. M. Sisk, S. I. Bühring, K. U. Hinrichs, L. R. Krumholz, 2007. Phylogenetic and metabolic diversity of Planctomycetes from anaerobic, sulfide- and sulfur-rich Zodletone Spring, Oklahoma.Appl Environ Microbiol. 73: 4707-16. PubMed

W. Rabsch, L. Ma, G. Wiley, F. Z. Najar, W. Kaserer, D. W. Schuerch, J. E. Klebba, B. A. Roe, J. A. Laverde Gomez, M. Schallmey, S. M. Newton, P. E. Klebba, 2007. FepA- and TonB-dependent bacteriophage H8: receptor binding and genomic sequence.J Bacteriol. 189: 5658-74. PubMed

Y. Jiao, J. Yan, F. Jiao, H. Yang, L. R. Donahue, X. Li, B. A. Roe, J. Stuart, W. Gu, 2007. A single nucleotide mutation in Nppc is associated with a long bone abnormality in lbab mice.BMC Genet. 8: 16. PubMed

E. J. Gauger, M. P. Leatham, R. Mercado-Lubo, D. C. Laux, T. Conway, P. S. Cohen, 2007. Role of motility and the flhDC Operon in Escherichia coli MG1655 colonization of the mouse intestine.Infect Immun. 75: 3315-24. PubMed

S. C. Fernando, F. Z. Najar, X. Guo, L. Zhou, Y. Fu, R. D. Geisert, B. A. Roe, U. DeSilva, 2007. Porcine kallikrein gene family: genomic structure, mapping, and differential expression analysis.Genomics. 89: 429-38. PubMed

J. Yan, Y. Jiao, F. Jiao, J. Stuart, L. R. Donahue, W. G. Beamer, X. Li, B. A. Roe, M. S. LeDoux, W. Gu, 2007. Effects of carbonic anhydrase VIII deficiency on cerebellar gene expression profiles in the wdl mouse.Neurosci Lett. 413: 196-201. PubMed


E. L. Dally, T. S. Barros, Y. Zhao, S. Lin, B. A. Roe, R. E. Davis, 2006. Physical and genetic map of the Spiroplasma kunkelii CR2-3x chromosome.Can J Microbiol. 52: 857-67. PubMed

T. A. Snider, A. J. Fabich, K. E. Washburn, W. P. Sims, J. L. Blair, P. S. Cohen, T. Conway, K. D. Clinkenbeard, 2006. Evaluation of a model for Escherichia coli O157:H7 colonization in streptomycin-treated adult cattle.Am J Vet Res. 67: 1914-20. PubMed

S. B. Cannon, L. Sterck, S. Rombauts, S. Sato, F. Cheung, J. Gouzy, X. Wang, J. Mudge, J. Vasdewani, T. Schiex, T. Scheix, M. Spannagl, E. Monaghan, C. Nicholson, S. J. Humphray, H. Schoof, K. F. Mayer, J. Rogers, F. Quétier, G. E. Oldroyd, F. Debellé, D. R. Cook, E. F. Retzel, B. A. Roe, C. D. Town, S. Tabata, Y. Van de Peer, N. D. Young, 2006. Legume genome evolution viewed through the Medicago truncatula and Lotus japonicus genomes.Proc Natl Acad Sci U S A. 103: 14959-64. PubMed

J. H. Larson, B. M. Marron, J. E. Beever, B. A. Roe, H. A. Lewin, 2006. Genomic organization and evolution of the ULBP genes in cattle.BMC Genomics. 7: 227. PubMed

G. Bakkeren, G. Jiang, R. L. Warren, Y. Butterfield, H. Shin, R. Chiu, R. Linning, J. Schein, N. Lee, G. Hu, D. M. Kupfer, Y. Tang, B. A. Roe, S. Jones, M. Marra, J. W. Kronstad, 2006. Mating factor linkage and genome evolution in basidiomycetous pathogens of cereals.Fungal Genet Biol. 43: 655-66. PubMed

J. D. Wren, T. Conway, 2006. Meta-analysis of published transcriptional and translational fold changes reveals a preference for low-fold inductions.OMICS. 10: 15-27. PubMed

T. A. Titus, D. R. Selvig, B. Qin, C. Wilson, A. M. Starks, B. A. Roe, J. H. Postlethwait, 2006. The Fanconi anemia gene network is conserved from zebrafish to human.Gene. 371: 211-23. PubMed

M. F. Traxler, D. E. Chang, T. Conway, 2006. Guanosine 3',5'-bispyrophosphate coordinates global gene expression during glucose-lactose diauxie in Escherichia coli.Proc Natl Acad Sci U S A. 103: 2374-9. PubMed

J. D. Wren, J. E. Grissom, T. Conway, 2006. E-mail decay rates among corresponding authors in MEDLINE. The ability to communicate with and request materials from authors is being eroded by the expiration of e-mail addresses.EMBO Rep. 7: 122-7. PubMed

M. Tchawa Yimga, M. P. Leatham, J. H. Allen, D. C. Laux, T. Conway, P. S. Cohen, 2006. Role of gluconeogenesis and the tricarboxylic acid cycle in the virulence of Salmonella enterica serovar Typhimurium in BALB/c mice.Infect Immun. 74: 1130-40. PubMed


Q. Zhang, U. Melcher, L. Zhou, F. Z. Najar, B. A. Roe, J. Fletcher, 2005. Genomic comparison of plant pathogenic and nonpathogenic Serratia marcescens strains by suppressive subtractive hybridization.Appl Environ Microbiol. 71: 7716-23. PubMed

M. P. Leatham, S. J. Stevenson, E. J. Gauger, K. A. Krogfelt, J. J. Lins, T. L. Haddock, S. M. Autieri, T. Conway, P. S. Cohen, 2005. Mouse intestine selects nonmotile flhDC mutants of Escherichia coli MG1655 with increased colonizing ability and better utilization of carbon sources.Infect Immun. 73: 8039-49. .pdf PubMed

M. S. Elshahed, F. Z. Najar, M. Aycock, C. Qu, B. A. Roe, L. R. Krumholz, 2005. Metagenomic analysis of the microbial community at Zodletone Spring (Oklahoma): insights into the genome of a member of the novel candidate division OD1.Appl Environ Microbiol. 71: 7598-602. PubMed

D. E. Chang, T. Conway, 2005. Metabolic genomics.Adv Microb Physiol. 50: 1-39. PubMed

Q. Luo, L. R. Krumholz, F. Z. Najar, A. D. Peacock, B. A. Roe, D. C. White, M. S. Elshahed, 2005. Diversity of the microeukaryotic community in sulfide-rich Zodletone Spring (Oklahoma).Appl Environ Microbiol. 71: 6175-84. PubMed

M. Kudo, M. Bao, A. D'Souza, F. Ying, H. Pan, B. A. Roe, W. M. Canfield, 2005. The alpha- and beta-subunits of the human UDP-N-acetylglucosamine:lysosomal enzyme N-acetylglucosamine-1-phosphotransferase [corrected] are encoded by a single cDNA.J Biol Chem. 280: 36141-9. PubMed

Y. Jiao, J. Yan, Y. Zhao, L. R. Donahue, W. G. Beamer, X. Li, B. A. Roe, M. S. Ledoux, W. Gu, 2005. Carbonic anhydrase-related protein VIII deficiency is associated with a distinctive lifelong gait disorder in waddles mice.Genetics. 171: 1239-46. PubMed

J. Mudge, S. B. Cannon, P. Kalo, G. E. Oldroyd, B. A. Roe, C. D. Town, N. D. Young, 2005. Highly syntenic regions in the genomes of soybean, Medicago truncatula, and Arabidopsis thaliana.BMC Plant Biol. 5: 15. PubMed

S. B. Cannon, J. A. Crow, M. L. Heuer, X. Wang, E. K. Cannon, C. Dwan, A. F. Lamblin, J. Vasdewani, J. Mudge, A. Cook, J. Gish, F. Cheung, S. Kenton, T. M. Kunau, D. Brown, G. D. May, D. Kim, D. R. Cook, B. A. Roe, C. D. Town, N. D. Young, E. F. Retzel, 2005. Databases and information integration for the Medicago truncatula genome and transcriptome.Plant Physiol. 138: 38-46. PubMed

N. D. Young, S. B. Cannon, S. Sato, D. Kim, D. R. Cook, C. D. Town, B. A. Roe, S. Tabata, 2005. Sequencing the genespaces of Medicago truncatula and Lotus japonicus.Plant Physiol. 137: 1174-81. PubMed

X. He, X. He, V. P. Dave, Y. Zhang, X. Hua, E. Nicolas, W. Xu, B. A. Roe, D. J. Kappes, 2005. The zinc finger transcription factor Th-POK regulates CD4 versus CD8 T-cell lineage commitment.Nature. 433: 826-33. PubMed

Y. Zhang, M. A. Mian, K. Chekhovskiy, S. So, D. Kupfer, H. Lai, B. A. Roe, 2005. Differential gene expression in Festuca under heat stress conditions.J Exp Bot. 56: 897-907. PubMed

J. A. Bedell, M. A. Budiman, A. Nunberg, R. W. Citek, D. Robbins, J. Jones, E. Flick, T. Rholfing, J. Fries, K. Bradford, J. McMenamy, M. Smith, H. Holeman, B. A. Roe, G. Wiley, I. F. Korf, P. D. Rabinowicz, N. Lakey, W. R. McCombie, J. A. Jeddeloh, R. A. Martienssen, 2005. Sorghum genome sequencing by methylation filtration.PLoS Biol. 3: e13. PubMed

E. L. Murray, T. Conway, 2005. Multiple regulators control expression of the Entner-Doudoroff aldolase (Eda) of Escherichia coli.J Bacteriol. 187: 991-1000. .pdf PubMed


J. D. Wren, M. Yao, M. Langer, T. Conway, 2004. Simulated annealing of microarray data reduces noise and enables cross-experimental comparisons.DNA Cell Biol. 23: 695-700. PubMed

R. A. Grahn, D. S. Biller, A. E. Young, B. A. Roe, B. Qin, L. A. Lyons, 2004. Genetic testing for feline polycystic kidney disease.Anim Genet. 35: 503-4. PubMed

C. Bates Utz, A. B. Nguyen, D. J. Smalley, A. B. Anderson, T. Conway, 2004. GntP is the Escherichia coli Fructuronic acid transporter and belongs to the UxuR regulon.J Bacteriol. 186: 7690-6. .pdf PubMed

E. E. Thompson, H. Kuttab-Boulos, D. Witonsky, L. Yang, B. A. Roe, A. Di Rienzo, 2004. CYP3A variation and the evolution of salt-sensitivity variants.Am J Hum Genet. 75: 1059-69. PubMed

O. Kulikova, R. Geurts, M. Lamine, D. J. Kim, D. R. Cook, J. Leunissen, H. de Jong, B. A. Roe, T. Bisseling, 2004. Satellite repeats in the functional centromere and pericentromeric heterochromatin of Medicago truncatula.Chromosoma. 113: 276-83. PubMed

D. M. Kupfer, S. D. Drabenstot, K. L. Buchanan, H. Lai, H. Zhu, D. W. Dyer, B. A. Roe, J. W. Murphy, 2004. Introns and splicing elements of five diverse fungi.Eukaryot Cell. 3: 1088-100. PubMed

L. A. Lyons, D. S. Biller, C. A. Erdman, M. J. Lipinski, A. E. Young, B. A. Roe, B. Qin, R. A. Grahn, 2004. Feline polycystic kidney disease mutation identified in PKD1.J Am Soc Nephrol. 15: 2548-55. PubMed

D. E. Chang, D. J. Smalley, D. L. Tucker, M. P. Leatham, W. E. Norris, S. J. Stevenson, A. B. Anderson, J. E. Grissom, D. C. Laux, P. S. Cohen, T. Conway, 2004. Carbon nutrition of Escherichia coli in the mouse intestine.Proc Natl Acad Sci U S A. 101: 7427-32. .pdf PubMed

H. K. Choi, D. Kim, T. Uhm, E. Limpens, H. Lim, J. H. Mun, P. Kalo, R. V. Penmetsa, A. Seres, O. Kulikova, B. A. Roe, T. Bisseling, G. B. Kiss, D. R. Cook, 2004. A sequence-based genetic map of Medicago truncatula and comparison of marker colinearity with M. sativa.Genetics. 166: 1463-502. PubMed

M. S. Elshahed, F. Z. Najar, B. A. Roe, A. Oren, T. A. Dewers, L. R. Krumholz, 2004. Survey of archaeal diversity reveals an abundance of halophilic Archaea in a low-salt, sulfide- and sulfur-rich spring.Appl Environ Microbiol. 70: 2230-9. PubMed

Y. Zhao, H. Wang, R. W. Hammond, R. Jomantiene, Q. Liu, S. Lin, B. A. Roe, R. E. Davis, 2004. Predicted ATP-binding cassette systems in the phytopathogenic mollicute Spiroplasma kunkelii.Mol Genet Genomics. 271: 325-38. PubMed

B. A. Roe, 2004. Shotgun library construction for DNA sequencing.Methods Mol Biol. 255: 171-87. PubMed

Y. Zhao, R. W. Hammond, I. M. Lee, B. A. Roe, S. Lin, R. E. Davis, 2004. Cell division gene cluster in Spiroplasma kunkelii: functional characterization of ftsZ and the first report of ftsA in mollicutes.DNA Cell Biol. 23: 127-34. PubMed

R. L. Miranda, T. Conway, M. P. Leatham, D. E. Chang, W. E. Norris, J. H. Allen, S. J. Stevenson, D. C. Laux, P. S. Cohen, 2004. Glycolytic and gluconeogenic growth of Escherichia coli O157:H7 (EDL933) and E. coli K-12 (MG1655) in the mouse intestine.Infect Immun. 72: 1666-76. .pdf PubMed

C. Bausch, M. Ramsey, T. Conway, 2004. Transcriptional organization and regulation of the L-idonic acid pathway (GntII system) in Escherichia coli.J Bacteriol. 186: 1388-97. .pdf PubMed

J. M. Ané, G. B. Kiss, B. K. Riely, R. V. Penmetsa, G. E. Oldroyd, C. Ayax, J. Lévy, F. Debellé, J. M. Baek, P. Kalo, C. Rosenberg, B. A. Roe, S. R. Long, J. Dénarié, D. R. Cook, 2004. Medicago truncatula DMI1 required for bacterial and fungal symbioses in legumes.Science. 303: 1364-7. PubMed


B. A. Roe, C. Lau, S. Oommen, J. Li, A. Hua, H. S. Lai, S. Kenton, J. White, H. Wang, 2003. Comparative analysis of human chromosome 22q11.1-q12.3 with syntenic regions in the chimpanzee, baboon, bovine, mouse, pufferfish, and zebrafish genomes.Cold Spring Harb Symp Quant Biol. 68: 265-74. PubMed

U. DeSilva, X. Guo, D. M. Kupfer, S. C. Fernando, A. T. Pillai, F. Z. Najar, S. So, G. Q. Fitch, B. A. Roe, 2003. Allelic variants of ovine prion protein gene (PRNP) in Oklahoma sheep.Cytogenet Genome Res. 102: 89-94. PubMed

S. D. Drabenstot, D. M. Kupfer, J. D. White, D. W. Dyer, B. A. Roe, K. L. Buchanan, J. W. Murphy, 2003. FELINES: a utility for extracting and examining EST-defined introns and exons.Nucleic Acids Res. 31: e141. PubMed

M. S. Elshahed, J. M. Senko, F. Z. Najar, S. M. Kenton, B. A. Roe, T. A. Dewers, J. R. Spear, L. R. Krumholz, 2003. Bacterial diversity and sulfur cycling in a mesophilic sulfide-rich spring.Appl Environ Microbiol. 69: 5609-21. PubMed

Z. Ma, S. Gong, H. Richard, D. L. Tucker, T. Conway, J. W. Foster, 2003. GadE (YhiE) activates glutamate decarboxylase-dependent acid resistance in Escherichia coli K-12.Mol Microbiol. 49: 1309-20. .pdf PubMed

C. M. Hansson, H. Ali, C. E. Bruder, I. Fransson, S. Kluge, B. Andersson, B. A. Roe, U. Menzel, J. P. Dumanski, 2003. Strong conservation of the human NF2 locus based on sequence comparison in five species.Mamm Genome. 14: 526-36. PubMed

W. Li, Q. Zhang, N. Oiso, E. K. Novak, R. Gautam, E. P. O'Brien, C. L. Tinsley, D. J. Blake, R. A. Spritz, N. G. Copeland, N. A. Jenkins, D. Amato, B. A. Roe, M. Starcevic, E. C. Dell'Angelica, R. W. Elliott, V. Mishra, S. F. Kingsmore, R. E. Paylor, R. T. Swank, 2003. Hermansky-Pudlak syndrome type 7 (HPS-7) results from mutant dysbindin, a member of the biogenesis of lysosome-related organelles complex 1 (BLOC-1).Nat Genet. 35: 84-9. PubMed

X. Guo, D. M. Kupfer, G. Q. Fitch, B. A. Roe, U. DeSilva, 2003. Identification of a novel lysine-171 allele in the ovine prion protein (PRNP ) gene.Anim Genet. 34: 303-5. PubMed

Y. Zhao, R. W. Hammond, R. Jomantiene, E. L. Dally, I. M. Lee, H. Jia, H. Wu, S. Lin, P. Zhang, S. Kenton, F. Z. Najar, A. Hua, B. A. Roe, J. Fletcher, R. E. Davis, 2003. Gene content and organization of an 85-kb DNA segment from the genome of the phytopathogenic mollicute Spiroplasma kunkelii.Mol Genet Genomics. 269: 592-602. PubMed

S. Deschamps, J. Meyer, G. Chatterjee, H. Wang, P. Lengyel, B. A. Roe, 2003. The mouse Ifi200 gene cluster: genomic sequence, analysis, and comparison with the human HIN-200 gene cluster.Genomics. 82: 34-46. PubMed

J. E. Horvath, C. L. Gulden, J. A. Bailey, C. Yohn, J. D. McPherson, A. Prescott, B. A. Roe, P. J. de Jong, M. Ventura, D. Misceo, N. Archidiacono, S. Zhao, S. Schwartz, M. Rocchi, E. E. Eichler, 2003. Using a pericentromeric interspersed repeat to recapitulate the phylogeny and expansion of human centromeric segmental duplications.Mol Biol Evol. 20: 1463-79. PubMed

A. J. Wolfe, D. E. Chang, J. D. Walker, J. E. Seitz-Partridge, M. D. Vidaurri, C. F. Lange, B. M. Prüss, M. C. Henk, J. C. Larkin, T. Conway, 2003. Evidence that acetyl phosphate functions as a global signal during biofilm development.Mol Microbiol. 48: 977-88. .pdf PubMed

D. L. Tucker, N. Tucker, Z. Ma, J. W. Foster, R. L. Miranda, P. S. Cohen, T. Conway, 2003. Genes of the GadX-GadW regulon in Escherichia coli.J Bacteriol. 185: 3190-201. .pdf PubMed

A. E. Wanken, T. Conway, K. A. Eaton, 2003. The Entner-Doudoroff pathway has little effect on Helicobacter pylori colonization of mice.Infect Immun. 71: 2920-3. .pdf PubMed

A. K. Møller, M. P. Leatham, T. Conway, P. J. Nuijten, L. A. de Haan, K. A. Krogfelt, P. S. Cohen, 2003. An Escherichia coli MG1655 lipopolysaccharide deep-rough core mutant grows and survives in mouse cecal mucus but fails to colonize the mouse large intestine.Infect Immun. 71: 2142-52. .pdf PubMed

T. Conway, G. K. Schoolnik, 2003. Microarray expression profiling: capturing a genome-wide portrait of the transcriptome.Mol Microbiol. 47: 879-89. .pdf PubMed

Q. Zhang, B. Zhao, W. Li, N. Oiso, E. K. Novak, M. E. Rusiniak, R. Gautam, S. Chintala, E. P. O'Brien, Y. Zhang, B. A. Roe, R. W. Elliott, E. M. Eicher, P. Liang, C. Kratz, E. Legius, R. A. Spritz, T. N. O'Sullivan, N. G. Copeland, N. A. Jenkins, R. T. Swank, 2003. Ru2 and Ru encode mouse orthologs of the genes mutated in human Hermansky-Pudlak syndrome types 5 and 6.Nat Genet. 33: 145-53. PubMed

D. J. Smalley, M. Whiteley, T. Conway, 2003. In search of the minimal Escherichia coli genome.Trends Microbiol. 11: 6-8. .pdf PubMed


T. I. Gan, L. Rowen, R. Nesbitt, B. A. Roe, H. Wu, P. Hu, Z. Yao, U. J. Kim, T. O'Sickey, M. Bina, 2002. Genomic organization of human TCF12 gene and spliced mRNA variants producing isoforms of transcription factor HTF4.Cytogenet Genome Res. 98: 245-8. PubMed

. , R. H. Waterston, K. Lindblad-Toh, E. Birney, J. Rogers, J. F. Abril, P. Agarwal, R. Agarwala, R. Ainscough, M. Alexandersson, P. An, S. E. Antonarakis, J. Attwood, R. Baertsch, J. Bailey, K. Barlow, S. Beck, E. Berry, B. Birren, T. Bloom, P. Bork, M. Botcherby, N. Bray, M. R. Brent, D. G. Brown, S. D. Brown, C. Bult, J. Burton, J. Butler, R. D. Campbell, P. Carninci, S. Cawley, F. Chiaromonte, A. T. Chinwalla, D. M. Church, M. Clamp, C. Clee, F. S. Collins, L. L. Cook, R. R. Copley, A. Coulson, O. Couronne, J. Cuff, V. Curwen, T. Cutts, M. Daly, R. David, J. Davies, K. D. Delehaunty, J. Deri, E. T. Dermitzakis, C. Dewey, N. J. Dickens, M. Diekhans, S. Dodge, I. Dubchak, D. M. Dunn, S. R. Eddy, L. Elnitski, R. D. Emes, P. Eswara, E. Eyras, A. Felsenfeld, G. A. Fewell, P. Flicek, K. Foley, W. N. Frankel, L. A. Fulton, R. S. Fulton, T. S. Furey, D. Gage, R. A. Gibbs, G. Glusman, S. Gnerre, N. Goldman, L. Goodstadt, D. Grafham, T. A. Graves, E. D. Green, S. Gregory, R. Guigó, M. Guyer, R. C. Hardison, D. Haussler, Y. Hayashizaki, L. W. Hillier, A. Hinrichs, W. Hlavina, T. Holzer, F. Hsu, A. Hua, T. Hubbard, A. Hunt, I. Jackson, D. B. Jaffe, L. S. Johnson, M. Jones, T. A. Jones, A. Joy, M. Kamal, E. K. Karlsson, D. Karolchik, A. Kasprzyk, J. Kawai, E. Keibler, C. Kells, W. J. Kent, A. Kirby, D. L. Kolbe, I. Korf, R. S. Kucherlapati, E. J. Kulbokas, D. Kulp, T. Landers, J. P. Leger, S. Leonard, I. Letunic, R. Levine, J. Li, M. Li, C. Lloyd, S. Lucas, B. Ma, D. R. Maglott, E. R. Mardis, L. Matthews, E. Mauceli, J. H. Mayer, M. McCarthy, W. R. McCombie, S. McLaren, K. McLay, J. D. McPherson, J. Meldrim, B. Meredith, J. P. Mesirov, W. Miller, T. L. Miner, E. Mongin, K. T. Montgomery, M. Morgan, R. Mott, J. C. Mullikin, D. M. Muzny, W. E. Nash, J. O. Nelson, M. N. Nhan, R. Nicol, Z. Ning, C. Nusbaum, M. J. O'Connor, Y. Okazaki, K. Oliver, E. Overton-Larty, L. Pachter, G. Parra, K. H. Pepin, J. Peterson, P. Pevzner, R. Plumb, C. S. Pohl, A. Poliakov, T. C. Ponce, C. P. Ponting, S. Potter, M. Quail, A. Reymond, B. A. Roe, K. M. Roskin, E. M. Rubin, A. G. Rust, R. Santos, V. Sapojnikov, B. Schultz, J. Schultz, M. S. Schwartz, S. Schwartz, C. Scott, S. Seaman, S. Searle, T. Sharpe, A. Sheridan, R. Shownkeen, S. Sims, J. B. Singer, G. Slater, A. Smit, D. R. Smith, B. Spencer, A. Stabenau, N. Stange-Thomann, C. Sugnet, M. Suyama, G. Tesler, J. Thompson, D. Torrents, E. Trevaskis, J. Tromp, C. Ucla, A. Ureta-Vidal, J. P. Vinson, A. C. Von Niederhausern, C. M. Wade, M. Wall, R. J. Weber, R. B. Weiss, M. C. Wendl, A. P. West, K. Wetterstrand, R. Wheeler, S. Whelan, J. Wierzbowski, D. Willey, S. Williams, R. K. Wilson, E. Winter, K. C. Worley, D. Wyman, S. Yang, S. P. Yang, E. M. Zdobnov, M. C. Zody, E. S. Lander, 2002. Initial sequencing and comparative analysis of the mouse genome.Nature. 420: 520-62. PubMed

Z. Ma, H. Richard, D. L. Tucker, T. Conway, J. W. Foster, 2002. Collaborative regulation of Escherichia coli glutamate-dependent acid resistance by two AraC-like regulators, GadX and GadW (YhiW).J Bacteriol. 184: 7001-12. .pdf PubMed

D. L. Tucker, N. Tucker, T. Conway, 2002. Gene expression profiling of the pH response in Escherichia coli.J Bacteriol. 184: 6551-8. .pdf PubMed

D. Ajdić, W. M. McShan, R. E. McLaughlin, G. Savić, J. Chang, M. B. Carson, C. Primeaux, R. Tian, S. Kenton, H. Jia, S. Lin, Y. Qian, S. Li, H. Zhu, F. Najar, H. Lai, J. White, B. A. Roe, J. J. Ferretti, 2002. Genome sequence of Streptococcus mutans UA159, a cariogenic dental pathogen.Proc Natl Acad Sci U S A. 99: 14434-9. PubMed

E. S. Srivatsan, R. Chakrabarti, K. Zainabadi, S. D. Pack, P. Benyamini, M. S. Mendonca, P. K. Yang, K. Kang, D. Motamedi, M. P. Sawicki, Z. Zhuang, R. A. Jesudasan, U. Bengtsson, C. Sun, B. A. Roe, E. J. Stanbridge, S. P. Wilczynski, J. L. Redpath, 2002. Localization of deletion to a 300 Kb interval of chromosome 11q13 in cervical cancer.Oncogene. 21: 5631-42. PubMed

H. Wang, B. Ding, C. J. Liu, X. Y. Ma, S. Deschamps, B. A. Roe, P. Lengyel, 2002. The increase in levels of interferon-inducible proteins p202a and p202b and RNA-dependent protein kinase (PKR) during myoblast differentiation is due to transactivation by MyoD: their tissue distribution in uninfected mice does not depend on interferons.J Interferon Cytokine Res. 22: 729-37. PubMed

D. E. Chang, D. J. Smalley, T. Conway, 2002. Gene expression profiling of Escherichia coli growth transitions: an expanded stringent response model.Mol Microbiol. 45: 289-306. .pdf PubMed

K. Rithidech, J. J. Dunn, B. A. Roe, C. R. Gordon, E. P. Cronkite, 2002. Evidence for two commonly deleted regions on mouse chromosome 2 in gamma ray-induced acute myeloid leukemic cells.Exp Hematol. 30: 564-70. PubMed

J. J. Iandolo, V. Worrell, K. H. Groicher, Y. Qian, R. Tian, S. Kenton, A. Dorman, H. Ji, S. Lin, P. Loh, S. Qi, H. Zhu, B. A. Roe, 2002. Comparative analysis of the genomes of the temperate bacteriophages phi 11, phi 12 and phi 13 of Staphylococcus aureus 8325.Gene. 289: 109-18. PubMed

Q. Zhang, W. Li, E. K. Novak, A. Karim, V. S. Mishra, S. F. Kingsmore, B. A. Roe, T. Suzuki, R. T. Swank, 2002. The gene for the muted (mu) mouse, a model for Hermansky-Pudlak syndrome, defines a novel protein which regulates vesicle trafficking.Hum Mol Genet. 11: 697-706. PubMed

T. Conway, B. Kraus, D. L. Tucker, D. J. Smalley, A. F. Dorman, L. McKibben, 2002. DNA array analysis in a Microsoft Windows environment.Biotechniques. 32: 110, 112-4, 116, 118-9. .pdf PubMed

G. Szalai, G. Duester, R. Friedman, H. Jia, S. Lin, B. A. Roe, M. R. Felder, 2002. Organization of six functional mouse alcohol dehydrogenase genes on two overlapping bacterial artificial chromosomes.Eur J Biochem. 269: 224-32. PubMed


T. Suzuki, W. Li, Q. Zhang, E. K. Novak, E. V. Sviderskaya, A. Wilson, D. C. Bennett, B. A. Roe, R. T. Swank, R. A. Spritz, 2001. The gene mutated in cocoa mice, carrying a defect of organelle biogenesis, is a homologue of the human Hermansky-Pudlak syndrome-3 gene.Genomics. 78: 30-7. PubMed

R. E. Broughton, J. E. Milam, B. A. Roe, 2001. The complete sequence of the zebrafish (Danio rerio) mitochondrial genome and evolutionary patterns in vertebrate mitochondrial DNA.Genome Res. 11: 1958-67. PubMed

I. Tapia-Páez, M. Kost-Alimova, P. Hu, B. A. Roe, E. Blennow, L. Fedorova, S. Imreh, J. P. Dumanski, 2001. The position of t(11;22)(q23;q11) constitutional translocation breakpoint is conserved among its carriers.Hum Genet. 109: 167-77. PubMed

T. K. Footz, P. Brinkman-Mills, G. S. Banting, S. A. Maier, M. A. Riazi, L. Bridgland, S. Hu, B. Birren, S. Minoshima, N. Shimizu, H. Pan, T. Nguyen, F. Fang, Y. Fu, L. Ray, H. Wu, S. Shaull, S. Phan, Z. Yao, F. Chen, A. Huan, P. Hu, Q. Wang, P. Loh, S. Qi, B. A. Roe, H. E. McDermid, 2001. Analysis of the cat eye syndrome critical region in humans and the region of conserved synteny in mice: a search for candidate genes at or near the human chromosome 22 pericentromere.Genome Res. 11: 1053-70. PubMed

W. Ji, F. Chen, T. Do, A. Do, B. A. Roe, M. H. Meisler, 2001. DQX1, an RNA-dependent ATPase homolog with a novel DEAQ box: expression pattern and genomic sequence comparison of the human and mouse genes.Mamm Genome. 12: 456-61. PubMed

M. Levine, A. Progulske-Fox, N. D. Denslow, W. G. Farmerie, D. M. Smith, W. T. Swearingen, F. C. Miller, Z. Liang, B. A. Roe, H. Q. Pan, 2001. Identification of lysine decarboxylase as a mammalian cell growth inhibitor in Eikenella corrodens: possible role in periodontal disease.Microb Pathog. 30: 179-92. PubMed

J. J. Ferretti, W. M. McShan, D. Ajdic, D. J. Savic, G. Savic, K. Lyon, C. Primeaux, S. Sezate, A. N. Suvorov, S. Kenton, H. S. Lai, S. P. Lin, Y. Qian, H. G. Jia, F. Z. Najar, Q. Ren, H. Zhu, L. Song, J. White, X. Yuan, S. W. Clifton, B. A. Roe, R. McLaughlin, 2001. Complete genome sequence of an M1 strain of Streptococcus pyogenes.Proc Natl Acad Sci U S A. 98: 4658-63. PubMed

H. Zhu, M. Nowrousian, D. Kupfer, H. V. Colot, G. Berrocal-Tito, H. Lai, D. Bell-Pedersen, B. A. Roe, J. J. Loros, J. C. Dunlap, 2001. Analysis of expressed sequence tags from two starvation, time-of-day-specific libraries of Neurospora crassa reveals novel clock-controlled genes.Genetics. 157: 1057-65. PubMed

E. S. Lander, L. M. Linton, B. Birren, C. Nusbaum, M. C. Zody, J. Baldwin, K. Devon, K. Dewar, M. Doyle, W. FitzHugh, R. Funke, D. Gage, K. Harris, A. Heaford, J. Howland, L. Kann, J. Lehoczky, R. LeVine, P. McEwan, K. McKernan, J. Meldrim, J. P. Mesirov, C. Miranda, W. Morris, J. Naylor, C. Raymond, M. Rosetti, R. Santos, A. Sheridan, C. Sougnez, N. Stange-Thomann, N. Stojanovic, A. Subramanian, D. Wyman, J. Rogers, J. Sulston, R. Ainscough, S. Beck, D. Bentley, J. Burton, C. Clee, N. Carter, A. Coulson, R. Deadman, P. Deloukas, A. Dunham, I. Dunham, R. Durbin, L. French, D. Grafham, S. Gregory, T. Hubbard, S. Humphray, A. Hunt, M. Jones, C. Lloyd, A. McMurray, L. Matthews, S. Mercer, S. Milne, J. C. Mullikin, A. Mungall, R. Plumb, M. Ross, R. Shownkeen, S. Sims, R. H. Waterston, R. K. Wilson, L. W. Hillier, J. D. McPherson, M. A. Marra, E. R. Mardis, L. A. Fulton, A. T. Chinwalla, K. H. Pepin, W. R. Gish, S. L. Chissoe, M. C. Wendl, K. D. Delehaunty, T. L. Miner, A. Delehaunty, J. B. Kramer, L. L. Cook, R. S. Fulton, D. L. Johnson, P. J. Minx, S. W. Clifton, T. Hawkins, E. Branscomb, P. Predki, P. Richardson, S. Wenning, T. Slezak, N. Doggett, J. F. Cheng, A. Olsen, S. Lucas, C. Elkin, E. Uberbacher, M. Frazier, R. A. Gibbs, D. M. Muzny, S. E. Scherer, J. B. Bouck, E. J. Sodergren, K. C. Worley, C. M. Rives, J. H. Gorrell, M. L. Metzker, S. L. Naylor, R. S. Kucherlapati, D. L. Nelson, G. M. Weinstock, Y. Sakaki, A. Fujiyama, M. Hattori, T. Yada, A. Toyoda, T. Itoh, C. Kawagoe, H. Watanabe, Y. Totoki, T. Taylor, J. Weissenbach, R. Heilig, W. Saurin, F. Artiguenave, P. Brottier, T. Bruls, E. Pelletier, C. Robert, P. Wincker, D. R. Smith, L. Doucette-Stamm, M. Rubenfield, K. Weinstock, H. M. Lee, J. Dubois, A. Rosenthal, M. Platzer, G. Nyakatura, S. Taudien, A. Rump, H. Yang, J. Yu, J. Wang, G. Huang, J. Gu, L. Hood, L. Rowen, A. Madan, S. Qin, R. W. Davis, N. A. Federspiel, A. P. Abola, M. J. Proctor, R. M. Myers, J. Schmutz, M. Dickson, J. Grimwood, D. R. Cox, M. V. Olson, R. Kaul, C. Raymond, N. Shimizu, K. Kawasaki, S. Minoshima, G. A. Evans, M. Athanasiou, R. Schultz, B. A. Roe, F. Chen, H. Pan, J. Ramser, H. Lehrach, R. Reinhardt, W. R. McCombie, M. de la Bastide, N. Dedhia, H. Blöcker, K. Hornischer, G. Nordsiek, R. Agarwala, L. Aravind, J. A. Bailey, A. Bateman, S. Batzoglou, E. Birney, P. Bork, D. G. Brown, C. B. Burge, L. Cerutti, H. C. Chen, D. Church, M. Clamp, R. R. Copley, T. Doerks, S. R. Eddy, E. E. Eichler, T. S. Furey, J. Galagan, J. G. Gilbert, C. Harmon, Y. Hayashizaki, D. Haussler, H. Hermjakob, K. Hokamp, W. Jang, L. S. Johnson, T. A. Jones, S. Kasif, A. Kaspryzk, S. Kennedy, W. J. Kent, P. Kitts, E. V. Koonin, I. Korf, D. Kulp, D. Lancet, T. M. Lowe, A. McLysaght, T. Mikkelsen, J. V. Moran, N. Mulder, V. J. Pollara, C. P. Ponting, G. Schuler, J. Schultz, G. Slater, A. F. Smit, E. Stupka, J. Szustakowski, D. Thierry-Mieg, J. Thierry-Mieg, L. Wagner, J. Wallis, R. Wheeler, A. Williams, Y. I. Wolf, K. H. Wolfe, S. P. Yang, R. F. Yeh, F. Collins, M. S. Guyer, J. Peterson, A. Felsenfeld, K. A. Wetterstrand, A. Patrinos, M. J. Morgan, P. de Jong, J. J. Catanese, K. Osoegawa, H. Shizuya, S. Choi, Y. J. Chen, J. Szustakowki, . , 2001. Initial sequencing and analysis of the human genome.Nature. 409: 860-921. PubMed


M. T. Pletcher, B. A. Roe, F. Chen, T. Do, A. Do, E. Malaj, R. H. Reeves, 2000. Chromosome evolution: the junction of mammalian chromosomes in the formation of mouse chromosome 10.Genome Res. 10: 1463-7. PubMed

C. Liu, H. Wang, Z. Zhao, S. Yu, Y. B. Lu, J. Meyer, G. Chatterjee, S. Deschamps, B. A. Roe, P. Lengyel, 2000. MyoD-dependent induction during myoblast differentiation of p204, a protein also inducible by interferon.Mol Cell Biol. 20: 7024-36. PubMed

I. Tapia-Páez, K. P. O'Brien, M. Kost-Alimova, S. Sahlén, D. Kedra, C. E. Bruder, B. Andersson, B. A. Roe, P. Hu, S. Imreh, E. Blennow, J. P. Dumanski, 2000. Fine mapping of the constitutional translocation t(11;22)(q23;q11).Hum Genet. 106: 506-16. PubMed

P. L. Strissel, R. Strick, R. J. Tomek, B. A. Roe, J. D. Rowley, N. J. Zeleznik-Le, 2000. DNA structural properties of AF9 are similar to MLL and could act as recombination hot spots resulting in MLL/AF9 translocations and leukemogenesis.Hum Mol Genet. 9: 1671-9. PubMed

H. Kurahashi, T. H. Shaikh, P. Hu, B. A. Roe, B. S. Emanuel, M. L. Budarf, 2000. Regions of genomic instability on 22q11 and 11q23 as the etiology for the recurrent constitutional t(11;22).Hum Mol Genet. 9: 1665-70. PubMed

M. Luijten, Y. Wang, B. T. Smith, A. Westerveld, L. J. Smink, I. Dunham, B. A. Roe, T. J. Hulsebos, 2000. Mechanism of spreading of the highly related neurofibromatosis type 1 (NF1) pseudogenes on chromosomes 2, 14 and 22.Eur J Hum Genet. 8: 209-14. PubMed

M. A. Riazi, P. Brinkman-Mills, T. Nguyen, H. Pan, S. Phan, F. Ying, B. A. Roe, J. Tochigi, Y. Shimizu, S. Minoshima, N. Shimizu, M. Buchwald, H. E. McDermid, 2000. The human homolog of insect-derived growth factor, CECR1, is a candidate gene for features of cat eye syndrome.Genomics. 64: 277-85. PubMed

R. J. Moreland, M. E. Dresser, J. S. Rodgers, B. A. Roe, J. W. Conaway, R. C. Conaway, J. S. Hanas, 2000. Identification of a transcription factor IIIA-interacting protein.Nucleic Acids Res. 28: 1986-93. PubMed

T. H. Shaikh, H. Kurahashi, S. C. Saitta, A. M. O'Hare, P. Hu, B. A. Roe, D. A. Driscoll, D. M. McDonald-McGinn, E. H. Zackai, M. L. Budarf, B. S. Emanuel, 2000. Chromosome 22-specific low copy repeats and the 22q11.2 deletion syndrome: genomic organization and deletion endpoint analysis.Hum Mol Genet. 9: 489-501. PubMed

K. L. Hester, J. Lehman, F. Najar, L. Song, B. A. Roe, C. H. MacGregor, P. W. Hager, P. V. Phibbs, J. R. Sokatch, 2000. Crc is involved in catabolite repression control of the bkd operons of Pseudomonas putida and Pseudomonas aeruginosa.J Bacteriol. 182: 1144-9. PubMed

J. Zhou, B. Fogelgren, Z. Wang, B. A. Roe, J. A. Biegel, 2000. Isolation of genes from the rhabdoid tumor deletion region in chromosome band 22q11.2.Gene. 241: 133-41. PubMed


I. Dunham, N. Shimizu, B. A. Roe, S. Chissoe, A. R. Hunt, J. E. Collins, R. Bruskiewich, D. M. Beare, M. Clamp, L. J. Smink, R. Ainscough, J. P. Almeida, A. Babbage, C. Bagguley, J. Bailey, K. Barlow, K. N. Bates, O. Beasley, C. P. Bird, S. Blakey, A. M. Bridgeman, D. Buck, J. Burgess, W. D. Burrill, K. P. O'Brien, 1999. The DNA sequence of human chromosome 22.Nature. 402: 489-95. PubMed

H. Tao, C. Bausch, C. Richmond, F. R. Blattner, T. Conway, 1999. Functional genomics: expression analysis of Escherichia coli growing on minimal and rich media.J Bacteriol. 181: 6425-40. .pdf PubMed

E. Seroussi, D. Kedra, H. Q. Pan, M. Peyrard, C. Schwartz, P. Scambler, D. Donnai, B. A. Roe, J. P. Dumanski, 1999. Duplications on human chromosome 22 reveal a novel Ret Finger Protein-like gene family with sense and endogenous antisense transcripts.Genome Res. 9: 803-14. PubMed

A. C. Wong, D. Shkolny, A. Dorman, D. Willingham, B. A. Roe, H. E. McDermid, 1999. Two novel human RAB genes with near identical sequence each map to a telomere-associated region: the subtelomeric region of 22q13.3 and the ancestral telomere band 2q13.Genomics. 59: 326-34. PubMed

D. M. Kupfer, A. K. Chaturvedi, D. V. Canfield, B. A. Roe, 1999. PCR-based identification of postmortem microbial contaminants--a preliminary study.J Forensic Sci. 44: 592-6. PubMed

K. Matsuno, T. Blais, A. W. Serio, T. Conway, T. M. Henkin, A. L. Sonenshein, 1999. Metabolic imbalance and sporulation in an isocitrate dehydrogenase mutant of Bacillus subtilis.J Bacteriol. 181: 3382-91. .pdf PubMed

E. Seroussi, D. Kedra, M. Kost-Alimova, A. C. Sandberg-Nordqvist, I. Fransson, J. F. Jacobs, Y. Fu, H. Q. Pan, B. A. Roe, S. Imreh, J. P. Dumanski, 1999. TOM1 genes map to human chromosome 22q13.1 and mouse chromosome 8C1 and encode proteins similar to the endosomal proteins HGS and STAM.Genomics. 57: 380-8. PubMed

A. Johnson, S. Minoshima, S. Asakawa, N. Shimizu, H. Shizuya, B. A. Roe, H. E. McDermid, 1999. A 1.5-Mb contig within the cat eye syndrome critical region at human chromosome 22q11.2.Genomics. 57: 306-9. PubMed

T. H. Shaikh, S. Gottlieb, B. Sellinger, F. Chen, B. A. Roe, R. J. Oakey, B. S. Emanuel, M. L. Budarf, 1999. Characterization of CDC45L: a gene in the 22q11.2 deletion region expressed during murine and human development.Mamm Genome. 10: 322-6. PubMed

W. Jang, A. Hua, S. V. Spilson, W. Miller, B. A. Roe, M. H. Meisler, 1999. Comparative sequence of human and mouse BAC clones from the mnd2 region of chromosome 2p13.Genome Res. 9: 53-61. PubMed


F. Duffieux, P. Peyret, B. A. Roe, C. P. Vivares, 1998. First report on the systematic sequencing of the small genome of Encephalitozoon cuniculi (Protozoa, Microspora): gene organization of a 4.3 kbp region on chromosome I.Microb Comp Genomics. 3: 1-11. PubMed

D. Kersulyte, N. S. Akopyants, S. W. Clifton, B. A. Roe, D. E. Berg, 1998. Novel sequence organization and insertion specificity of IS605 and IS606: chimaeric transposable elements of Helicobacter pylori.Gene. 223: 175-86. PubMed

M. Atlas, D. Head, F. Behm, E. Schmidt, N. H. Zeleznik-Le, B. A. Roe, D. Burian, P. H. Domer, 1998. Cloning and sequence analysis of four t(9;11) therapy-related leukemia breakpoints.Leukemia. 12: 1895-902. PubMed

D. Kedra, H. Q. Pan, E. Seroussi, I. Fransson, C. Guilbaud, J. E. Collins, I. Dunham, E. Blennow, B. A. Roe, F. Piehl, J. P. Dumanski, 1998. Characterization of the human synaptogyrin gene family.Hum Genet. 103: 131-41. PubMed

A. C. Chung, D. S. Durica, S. W. Clifton, B. A. Roe, P. M. Hopkins, 1998. Cloning of crustacean ecdysteroid receptor and retinoid-X receptor gene homologs and elevation of retinoid-X receptor mRNA by retinoic acid.Mol Cell Endocrinol. 139: 209-27. PubMed

C. Bausch, N. Peekhaus, C. Utz, T. Blais, E. Murray, T. Lowary, T. Conway, 1998. Sequence analysis of the GntII (subsidiary) system for gluconate metabolism reveals a novel pathway for L-idonic acid catabolism in Escherichia coli.J Bacteriol. 180: 3704-10. .pdf PubMed

N. Peekhaus, T. Conway, 1998. What's for dinner?: Entner-Doudoroff metabolism in Escherichia coli.J Bacteriol. 180: 3495-502. .pdf PubMed

S. W. Clifton, B. A. Roe, 1998. The beautifully simple but intriguingly complex world of small genomes.Genome Res. 8: 331-3. PubMed

E. Seroussi, H. Q. Pan, D. Kedra, B. A. Roe, J. P. Dumanski, 1998. Characterization of the human NIPSNAP1 gene from 22q12: a member of a novel gene family.Gene. 212: 13-20. PubMed

L. A. Lewis, K. Rohde, M. Gipson, B. Behrens, E. Gray, S. I. Toth, B. A. Roe, D. W. Dyer, 1998. Identification and molecular analysis of lbpBA, which encodes the two-component meningococcal lactoferrin receptor.Infect Immun. 66: 3017-23. PubMed

N. S. Akopyants, S. W. Clifton, D. Kersulyte, J. E. Crabtree, B. E. Youree, C. A. Reece, N. O. Bukanov, E. S. Drazek, B. A. Roe, D. E. Berg, 1998. Analyses of the cag pathogenicity island of Helicobacter pylori.Mol Microbiol. 28: 37-53. PubMed

N. Peekhaus, T. Conway, 1998. Positive and negative transcriptional regulation of the Escherichia coli gluconate regulon gene gntT by GntR and the cyclic AMP (cAMP)-cAMP receptor protein complex.J Bacteriol. 180: 1777-85. .pdf PubMed

L. K. Fuhrman, A. Wanken, K. W. Nickerson, T. Conway, 1998. Rapid accumulation of intracellular 2-keto-3-deoxy-6-phosphogluconate in an Entner-Doudoroff aldolase mutant results in bacteriostasis.FEMS Microbiol Lett. 159: 261-6. PubMed


P. Manickam, S. C. Guru, L. V. Debelenko, S. K. Agarwal, S. E. Olufemi, J. M. Weisemann, M. S. Boguski, J. S. Crabtree, Y. Wang, B. A. Roe, I. A. Lubensky, Z. Zhuang, M. B. Kester, A. L. Burns, A. M. Spiegel, S. J. Marx, L. A. Liotta, M. R. Emmert-Buck, F. S. Collins, S. C. Chandrasekharappa, 1997. Eighteen new polymorphic markers in the multiple endocrine neoplasia type 1 (MEN1) region.Hum Genet. 101: 102-8. PubMed

C. Guilbaud, M. Peyrard, I. Fransson, S. W. Clifton, B. A. Roe, N. P. Carter, J. P. Dumanski, 1997. Characterization of the mouse beta-prime adaptin gene; cDNA sequence, genomic structure, and chromosomal localization.Mamm Genome. 8: 651-6. PubMed

J. Flint, G. P. Bates, K. Clark, A. Dorman, D. Willingham, B. A. Roe, G. Micklem, D. R. Higgs, E. J. Louis, 1997. Sequence comparison of human and yeast telomeres identifies structurally distinct subtelomeric domains.Hum Mol Genet. 6: 1305-13. PubMed

P. C. Giardina, L. A. Foster, S. I. Toth, B. A. Roe, D. W. Dyer, 1997. Analysis of the alcABC operon encoding alcaligin biosynthesis enzymes in Bordetella bronchiseptica.Gene. 194: 19-24. PubMed

S. C. Guru, S. K. Agarwal, P. Manickam, S. E. Olufemi, J. S. Crabtree, J. M. Weisemann, M. B. Kester, Y. S. Kim, Y. Wang, M. R. Emmert-Buck, L. A. Liotta, A. M. Spiegel, M. S. Boguski, B. A. Roe, F. S. Collins, S. J. Marx, L. Burns, S. C. Chandrasekharappa, 1997. A transcript map for the 2.8-Mb region containing the multiple endocrine neoplasia type 1 locus.Genome Res. 7: 725-35. PubMed

S. C. Guru, S. E. Olufemi, P. Manickam, C. Cummings, L. M. Gieser, B. L. Pike, M. L. Bittner, Y. Jiang, A. C. Chinault, N. J. Nowak, A. Brzozowska, J. S. Crabtree, Y. Wang, B. A. Roe, J. M. Weisemann, M. S. Boguski, S. K. Agarwal, A. L. Burns, A. M. Spiegel, S. J. Marx, W. L. Flejter, P. J. de Jong, F. S. Collins, S. C. Chandrasekharappa, 1997. A 2.8-Mb clone contig of the multiple endocrine neoplasia type 1 (MEN1) region at 11q13.Genomics. 42: 436-45. PubMed

D. M. Kupfer, C. A. Reece, S. W. Clifton, B. A. Roe, R. A. Prade, 1997. Multicellular ascomycetous fungal genomes contain more than 8000 genes.Fungal Genet Biol. 21: 364-72. PubMed

S. C. Chandrasekharappa, S. C. Guru, P. Manickam, S. E. Olufemi, F. S. Collins, M. R. Emmert-Buck, L. V. Debelenko, Z. Zhuang, I. A. Lubensky, L. A. Liotta, J. S. Crabtree, Y. Wang, B. A. Roe, J. Weisemann, M. S. Boguski, S. K. Agarwal, M. B. Kester, Y. S. Kim, C. Heppner, Q. Dong, A. M. Spiegel, A. L. Burns, S. J. Marx, 1997. Positional cloning of the gene for multiple endocrine neoplasia-type 1.Science. 276: 404-7. PubMed

N. Galili, H. S. Baldwin, J. Lund, R. Reeves, W. Gong, Z. Wang, B. A. Roe, B. S. Emanuel, S. Nayak, C. Mickanin, M. I. Budarf, C. A. Buck, 1997. A region of mouse chromosome 16 is syntenic to the DiGeorge, velocardiofacial syndrome minimal critical region.Genome Res. 7: 399. PubMed

J. J. Ferretti, D. W. Dyer, B. A. Roe, 1997. Data available.Nature. 386: 320. PubMed

B. A. Roe, A. T. Lemley, 1997. Treatment of two insecticides in an electrochemical Fenton system.J Environ Sci Health B. 32: 261-81. PubMed

A. Porco, N. Peekhaus, C. Bausch, S. Tong, T. Isturiz, T. Conway, 1997. Molecular genetic characterization of the Escherichia coli gntT gene of GntI, the main system for gluconate metabolism.J Bacteriol. 179: 1584-90. PubMed

N. Peekhaus, S. Tong, J. Reizer, M. H. Saier, E. Murray, T. Conway, 1997. Characterization of a novel transporter family that includes multiple Escherichia coli gluconate transporters and their homologues.FEMS Microbiol Lett. 147: 233-8. PubMed

L. A. Lewis, E. Gray, Y. P. Wang, B. A. Roe, D. W. Dyer, 1997. Molecular characterization of hpuAB, the haemoglobin-haptoglobin-utilization operon of Neisseria meningitidis.Mol Microbiol. 23: 737-49. PubMed

J. J. Ferretti, B. A. Roe, S. W. Clifton, S. P. Lin, X. Wang, M. Zhan, A. Reece, A. N. Suvorov, W. M. McShan, 1997. The Streptococcus pyogenes genome sequencing project. A progress report.Adv Exp Med Biol. 418: 961-3. PubMed

N. Galili, H. S. Baldwin, J. Lund, R. Reeves, W. Gong, Z. Wang, B. A. Roe, B. S. Emanuel, S. Nayak, C. Mickanin, M. L. Budarf, C. A. Buck, 1997. A region of mouse chromosome 16 is syntenic to the DiGeorge, velocardiofacial syndrome minimal critical region.Genome Res. 7: 17-26. PubMed


J. L. Winston, S. I. Toth, B. A. Roe, D. W. Dyer, 1996. Cloning and characterization of the Actinobacillus actinomycetemcomitans gene encoding a heat-shock protein 90 homologue.Gene. 179: 199-204. PubMed

R. S. Gold, M. M. Meagher, S. Tong, R. W. Hutkins, T. Conway, 1996. Cloning and expression of the Zymomonas mobilis "production of ethanol" genes in Lactobacillus casei.Curr Microbiol. 33: 256-60. PubMed

B. A. Roe, C. G. Boojamra, J. L. Griggs, C. R. Bertozzi, 1996. Synthesis of beta-C-Glycosides of N-Acetylglucosamine via Keck Allylation Directed by Neighboring Phthalimide Groups.J Org Chem. 61: 6442-6445. PubMed

M. Peyrard, H. Q. Pan, D. Kedra, I. Fransson, S. Swahn, K. Hartman, S. W. Clifton, B. A. Roe, J. P. Dumanski, 1996. Structure of the promoter and genomic organization of the human beta'-adaptin gene (BAM22) from chromosome 22q12.Genomics. 36: 112-7. PubMed

J. L. Snoep, N. Arfman, L. P. Yomano, H. V. Westerhoff, T. Conway, L. O. Ingram, 1996. Control of glycolytic flux in Zymomonas mobilis by glucose 6-phosphate dehydrogenase activity.Biotechnol Bioeng. 51: 190-7. PubMed

S. Tong, A. Porco, T. Isturiz, T. Conway, 1996. Cloning and molecular genetic characterization of the Escherichia coli gntR, gntK, and gntU genes of GntI, the main system for gluconate metabolism.J Bacteriol. 178: 3260-9. PubMed

D. Kedra, M. Peyrard, I. Fransson, J. E. Collins, I. Dunham, B. A. Roe, J. P. Dumanski, 1996. Characterization of a second human clathrin heavy chain polypeptide gene (CLH-22) from chromosome 22q11.Hum Mol Genet. 5: 625-31. PubMed

E. Goldmuntz, Z. Wang, B. A. Roe, M. L. Budarf, 1996. Cloning, genomic organization, and chromosomal localization of human citrate transport protein to the DiGeorge/velocardiofacial syndrome minimal critical region.Genomics. 33: 271-6. PubMed

S. Lorain, S. Demczuk, V. Lamour, S. Toth, A. Aurias, B. A. Roe, M. Lipinski, 1996. Structural Organization of the WD repeat protein-encoding gene HIRA in the DiGeorge syndrome critical region of human chromosome 22.Genome Res. 6: 43-50. PubMed


P. C. Giardina, L. A. Foster, S. I. Toth, B. A. Roe, D. W. Dyer, 1995. Identification of alcA, a Bordetella bronchiseptica gene necessary for alcaligin production.Gene. 167: 133-6. PubMed

M. Bhattacharya, L. Fuhrman, A. Ingram, K. W. Nickerson, T. Conway, 1995. Single-run separation and detection of multiple metabolic intermediates by anion-exchange high-performance liquid chromatography and application to cell pool extracts prepared from Escherichia coli.Anal Biochem. 232: 98-106. PubMed

X. Wu, C. E. Robinson, H. W. Fong, J. S. Crabtree, B. R. Rodriguez, B. A. Roe, J. M. Gimble, 1995. Cloning and characterization of the murine activin receptor like kinase-1 (ALK-1) homolog.Biochem Biophys Res Commun. 216: 78-83. PubMed

N. Heisterkamp, M. P. Mulder, A. Langeveld, J. ten Hoeve, Z. Wang, B. A. Roe, J. Groffen, 1995. Localization of the human mitochondrial citrate transporter protein gene to chromosome 22Q11 in the DiGeorge syndrome critical region.Genomics. 29: 451-6. PubMed

N. T. Ma, Y. F. Wang, B. A. Roe, R. G. Harrison, 1995. Purification of an L-asparaginase-atrial natriuretic peptide fusion protein expressed in Escherichia coli.Biotechnol Bioeng. 47: 483-91. PubMed

D. R. Toal, S. W. Clifton, B. A. Roe, J. Downard, 1995. The esg locus of Myxococcus xanthus encodes the E1 alpha and E1 beta subunits of a branched-chain keto acid dehydrogenase.Mol Microbiol. 16: 177-89. PubMed

V. Baud, S. L. Chissoe, E. Viegas-Péquignot, S. Diriong, V. C. N'Guyen, B. A. Roe, M. Lipinski, 1995. EMR1, an unusual member in the family of hormone receptors with seven transmembrane segments.Genomics. 26: 334-44. PubMed

C. Parker, W. O. Barnell, J. L. Snoep, L. O. Ingram, T. Conway, 1995. Characterization of the Zymomonas mobilis glucose facilitator gene product (glf) in recombinant Escherichia coli: examination of transport mechanism, kinetics and the role of glucokinase in glucose transport.Mol Microbiol. 15: 795-802. PubMed

J. Ballard, J. Crabtree, B. A. Roe, R. K. Tweten, 1995. The primary structure of Clostridium septicum alpha-toxin exhibits similarity with that of Aeromonas hydrophila aerolysin.Infect Immun. 63: 340-4. PubMed


C. R. Valentine, M. J. Heinrich, S. L. Chissoe, B. A. Roe, 1994. DNA sequence of direct repeats of the sulI gene of plasmid pSa.Plasmid. 32: 222-7. PubMed

S. W. Clifton, D. McCarthy, B. A. Roe, 1994. Sequence of the rec-2 locus of Haemophilus influenzae: homologies to comE-ORF3 of Bacillus subtilis and msbA of Escherichia coli.Gene. 146: 95-100. PubMed

J. L. Snoep, N. Arfman, L. P. Yomano, R. K. Fliege, T. Conway, L. O. Ingram, 1994. Reconstruction of glucose uptake and phosphorylation in a glucose-negative mutant of Escherichia coli by using Zymomonas mobilis genes encoding the glucose facilitator protein and glucokinase.J Bacteriol. 176: 2133-5. PubMed

H. Q. Pan, Y. P. Wang, S. L. Chissoe, A. Bodenteich, Z. Wang, K. Iyer, S. W. Clifton, J. S. Crabtree, B. A. Roe, 1994. The complete nucleotide sequences of the SacBII Kan domain of the P1 pAD10-SacBII cloning vector and three cosmid cloning vectors: pTCF, svPHEP, and LAWRIST16.Genet Anal Tech Appl. 11: 181-6. PubMed


D. J. Smith, H. Zhu, P. R. Kolatkar, L. T. Tam, T. O. Baldwin, B. A. Roe, R. H. Broyles, A. F. Riggs, 1993. The hemoglobins of the bullfrog, Rana catesbeiana. The cDNA-derived amino acid sequences of the alpha chains of adult hemoglobins B and C: their roles in deoxygenation-induced aggregation.J Biol Chem. 268: 26961-71. PubMed


R. Fliege, S. Tong, A. Shibata, K. W. Nickerson, T. Conway, 1992. The Entner-Doudoroff pathway in Escherichia coli is induced for oxidative glucose metabolism via pyrroloquinoline quinone-dependent glucose dehydrogenase.Appl Environ Microbiol. 58: 3826-9. PubMed

M. E. Burnett, J. Liu, T. Conway, 1992. Molecular characterization of the Zymomonas mobilis enolase (eno) gene.J Bacteriol. 174: 6548-53. PubMed

J. P. Mejia, M. E. Burnett, H. An, W. O. Barnell, K. F. Keshav, T. Conway, L. O. Ingram, 1992. Coordination of expression of Zymomonas mobilis glycolytic and fermentative enzymes: a simple hypothesis based on mRNA stability.J Bacteriol. 174: 6438-43. PubMed

K. B. Shark, T. Conway, 1992. Cloning and molecular characterization of the DNA ligase gene (lig) from Zymomonas mobilis.FEMS Microbiol Lett. 75: 19-26. PubMed

T. Conway, 1992. The Entner-Doudoroff pathway: history, physiology and molecular biology.FEMS Microbiol Rev. 9: 1-27. .pdf PubMed

S. E. Egan, R. Fliege, S. Tong, A. Shibata, R. E. Wolf, T. Conway, 1992. Molecular characterization of the Entner-Doudoroff pathway in Escherichia coli: sequence analysis and localization of promoters for the edd-eda operon.J Bacteriol. 174: 4638-46. PubMed

R. Y. Hsu, M. J. Glynias, J. Satterlee, R. Feeney, A. R. Clarke, D. C. Emery, B. A. Roe, R. K. Wilson, A. G. Goodridge, J. J. Holbrook, 1992. Duck liver 'malic' enzyme. Expression in Escherichia coli and characterization of the wild-type enzyme and site-directed mutants.Biochem J. 284 ( Pt 3): 869-76. PubMed

J. Liu, W. O. Barnell, T. Conway, 1992. The polycistronic mRNA of the Zymomonas mobilis glf-zwf-edd-glk operon is subject to complex transcript processing.J Bacteriol. 174: 2824-33. PubMed

W. O. Barnell, J. Liu, T. L. Hesman, M. C. O'Neill, T. Conway, 1992. The Zymomonas mobilis glf, zwf, edd, and glk genes form an operon: localization of the promoter and identification of a conserved sequence in the regulatory region.J Bacteriol. 174: 2816-23. PubMed

A. Labidi, E. Mardis, B. A. Roe, R. J. Wallace, 1992. Cloning and DNA sequence of the Mycobacterium fortuitum var fortuitum plasmid pAL5000.Plasmid. 27: 130-40. PubMed


T. Conway, R. Fliege, D. Jones-Kilpatrick, J. Liu, W. O. Barnell, S. E. Egan, 1991. Cloning, characterization and expression of the Zymononas mobilis eda gene that encodes 2-keto-3-deoxy-6-phosphogluconate aldolase of the Entner-Doudoroff pathway.Mol Microbiol. 5: 2901-11. PubMed

T. Conway, K. C. Yi, S. E. Egan, R. E. Wolf, D. L. Rowley, 1991. Locations of the zwf, edd, and eda genes on the Escherichia coli physical map.J Bacteriol. 173: 5247-8. PubMed

L. Alexander, D. Falconet, B. W. Fristensky, M. J. White, J. C. Watson, B. A. Roe, W. F. Thompson, 1991. Nucleotide sequence of Cab-8, a new type I gene encoding a chlorophyll a/b-binding protein of LHC II in Pisum.Plant Mol Biol. 17: 523-6. PubMed

M. Adamowicz, T. Conway, K. W. Nickerson, 1991. Nutritional complementation of oxidative glucose metabolism in Escherichia coli via pyrroloquinoline quinone-dependent glucose dehydrogenase and the Entner-Doudoroff pathway.Appl Environ Microbiol. 57: 2012-5. PubMed

H. Y. Tsen, S. J. Wang, B. A. Roe, S. S. Green, 1991. DNA sequence of a Salmonella-specific DNA fragment and the use of oligonucleotide probes for Salmonella detection.Appl Microbiol Biotechnol. 35: 339-47. PubMed

S. K. Lal, S. Johnson, T. Conway, P. M. Kelley, 1991. Characterization of a maize cDNA that complements an enolase-deficient mutant of Escherichia coli.Plant Mol Biol. 16: 787-95. PubMed

T. L. Hesman, W. O. Barnell, T. Conway, 1991. Cloning, characterization, and nucleotide sequence analysis of a Zymomonas mobilis phosphoglucose isomerase gene that is subject to carbon source-dependent regulation.J Bacteriol. 173: 3215-23. PubMed


W. O. Barnell, K. C. Yi, T. Conway, 1990. Sequence and genetic organization of a Zymomonas mobilis gene cluster that encodes several enzymes of glucose metabolism.J Bacteriol. 172: 7227-40. PubMed

C. K. Stover, D. P. Marana, J. M. Carter, B. A. Roe, E. Mardis, E. V. Oaks, 1990. The 56-kilodalton major protein antigen of Rickettsia tsutsugamushi: molecular cloning and sequence analysis of the sta56 gene and precise identification of a strain-specific epitope.Infect Immun. 58: 2076-84. PubMed


C. K. Eddy, J. P. Mejia, T. Conway, L. O. Ingram, 1989. Differential expression of gap and pgk genes within the gap operon of Zymomonas mobilis.J Bacteriol. 171: 6549-54. PubMed

E. R. Mardis, B. A. Roe, 1989. Automated methods for single-stranded DNA isolation and dideoxynucleotide DNA sequencing reactions on a robotic workstation.Biotechniques. 7: 840-50. PubMed

K. F. Mackenzie, T. Conway, H. C. Aldrich, L. O. Ingram, 1989. Expression of Zymomonas mobilis adhB (encoding alcohol dehydrogenase II) and adhB-lacZ operon fusions in recombinant Z. mobilis.J Bacteriol. 171: 4577-82. PubMed

T. Conway, L. O. Ingram, 1989. Similarity of Escherichia coli propanediol oxidoreductase (fucO product) and an unusual alcohol dehydrogenase from Zymomonas mobilis and Saccharomyces cerevisiae.J Bacteriol. 171: 3754-9. PubMed

J. L. Pond, C. K. Eddy, K. F. Mackenzie, T. Conway, D. J. Borecky, L. O. Ingram, 1989. Cloning, sequencing, and characterization of the principal acid phosphatase, the phoC+ product, from Zymomonas mobilis.J Bacteriol. 171: 767-74. PubMed

R. K. Wilson, B. A. Roe, 1989. Presence of the hypermodified nucleotide N6-(delta 2-isopentenyl)-2-methylthioadenosine prevents codon misreading by Escherichia coli phenylalanyl-transfer RNA.Proc Natl Acad Sci U S A. 86: 409-13. PubMed


A. S. Khan, B. A. Roe, 1988. Aminoacylation of synthetic DNAs corresponding to Escherichia coli phenylalanine and lysine tRNAs.Science. 241: 74-9. PubMed

T. Yamamoto, I. A. Watkinson, L. Kim, M. V. Sage, R. Stratton, N. Akande, Y. Li, D. P. Ma, B. A. Roe, 1988. Nucleotide sequence of the gene coding for a 130-kDa mosquitocidal protein of Bacillus thuringiensis israelensis.Gene. 66: 107-20. PubMed

B. A. Roe, 1988. Computer programs for molecular biology: an overview of DNA sequencing and protein analysis packages.Biotechniques. 6: 560-2, 565. PubMed

B. A. Roe, L. Johnston-Dow, E. Mardis, 1988. Use of a chemically modified T7 DNA polymerase for manual and automated sequencing of supercoiled DNA.Biotechniques. 6: 520. PubMed

T. Conway, L. O. Ingram, 1988. Phosphoglycerate kinase gene from Zymomonas mobilis: cloning, sequencing, and localization within the gap operon.J Bacteriol. 170: 1926-33. PubMed

L. O. Ingram, T. Conway, 1988. Expression of Different Levels of Ethanologenic Enzymes from Zymomonas mobilis in Recombinant Strains of Escherichia coli.Appl Environ Microbiol. 54: 397-404. PubMed


T. Conway, G. W. Sewell, L. O. Ingram, 1987. Glyceraldehyde-3-phosphate dehydrogenase gene from Zymomonas mobilis: cloning, sequencing, and identification of promoter region.J Bacteriol. 169: 5653-62. PubMed

L. O. Ingram, T. Conway, D. P. Clark, G. W. Sewell, J. F. Preston, 1987. Genetic engineering of ethanol production in Escherichia coli.Appl Environ Microbiol. 53: 2420-5. PubMed

Z. E. Zehner, Y. Li, B. A. Roe, B. M. Paterson, C. M. Sax, 1987. The chicken vimentin gene. Nucleotide sequence, regulatory elements, and comparison to the hamster gene.J Biol Chem. 262: 8112-20. PubMed


E. Shtivelman, B. Lifshitz, R. P. Gale, B. A. Roe, E. Canaani, 1986. Alternative splicing of RNAs transcribed from the human abl gene and from the bcr-abl fused gene.Cell. 47: 277-84. PubMed

A. J. Clark, L. Beguinot, S. Ishii, D. P. Ma, B. A. Roe, G. T. Merlino, I. Pastan, 1986. Synthesis of epidermal growth factor (EGF) receptor in vitro using SP6 RNA polymerase-transcribed template mRNA.Biochim Biophys Acta. 867: 244-51. PubMed

R. K. Wilson, T. Brown, B. A. Roe, 1986. Nucleotide sequence of pheW; a third gene for E. coli tRNAPhe.Nucleic Acids Res. 14: 5937. PubMed


B. A. Roe, D. P. Ma, R. K. Wilson, J. F. Wong, 1985. The complete nucleotide sequence of the Xenopus laevis mitochondrial genome.J Biol Chem. 260: 9759-74. PubMed

S. Ishii, Y. H. Xu, R. H. Stratton, B. A. Roe, G. T. Merlino, I. Pastan, 1985. Characterization and sequence of the promoter region of the human epidermal growth factor receptor gene.Proc Natl Acad Sci U S A. 82: 4920-4. PubMed

G. T. Merlino, S. Ishii, J. Whang-Peng, T. Knutsen, Y. H. Xu, A. J. Clark, R. H. Stratton, R. K. Wilson, D. P. Ma, B. A. Roe, 1985. Structure and localization of genes encoding aberrant and normal epidermal growth factor receptor RNAs from A431 human carcinoma cells.Mol Cell Biol. 5: 1722-34. PubMed

R. Callahan, I. M. Chiu, J. F. Wong, S. R. Tronick, B. A. Roe, S. A. Aaronson, J. Schlom, 1985. A new class of endogenous human retroviral genomes.Science. 228: 1208-11. PubMed


D. P. Ma, E. Lund, J. E. Dahlberg, B. A. Roe, 1984. Nucleotide sequences of two regions of the human genome containing tRNAAsn genes.Gene. 28: 257-62. PubMed


J. F. Wong, D. P. Ma, R. K. Wilson, B. A. Roe, 1983. DNA sequence of the Xenopus laevis mitochondrial heavy and light strand replication origins and flanking tRNA genes.Nucleic Acids Res. 11: 4977-95. PubMed

I. Schwartz, R. A. Klotsky, D. Elseviers, P. J. Gallagher, M. Krauskopf, M. A. Siddiqui, J. F. Wong, B. A. Roe, 1983. Molecular cloning and sequencing of pheU, a gene for Escherichia coli tRNAPhe.Nucleic Acids Res. 11: 4379-89. PubMed


M. Bina, M. F. Radonovich, B. A. Roe, 1981. Fractionation of simian virus 40 DNA fragments by RPC-5 column chromatography.Anal Biochem. 114: 105-11. PubMed

S. Anderson, A. T. Bankier, B. G. Barrell, M. H. de Bruijn, A. R. Coulson, J. Drouin, I. C. Eperon, D. P. Nierlich, B. A. Roe, F. Sanger, P. H. Schreier, A. J. Smith, R. Staden, I. G. Young, 1981. Sequence and organization of the human mitochondrial genome.Nature. 290: 457-65. PubMed

A. G. DiLella, B. A. Roe, A. W. Steggles, 1981. Alterations in rabbit liver protein synthesis as a result of phenobarbital treatment.Biochem Biophys Res Commun. 98: 628-34. PubMed


E. Y. Chen, B. A. Roe, 1980. Structural comparison of human, bovine, rat, and Walker 256 carcinosarcoma asparaginyl-tRNA.Biochim Biophys Acta. 610: 272-84. PubMed

M. H. de Bruijn, P. H. Schreier, I. C. Eperon, B. G. Barrell, E. Y. Chen, P. W. Armstrong, J. F. Wong, B. A. Roe, 1980. A mammalian mitochondrial serine transfer RNA lacking the "dihydrouridine" loop and stem.Nucleic Acids Res. 8: 5213-22. PubMed

F. Sanger, A. R. Coulson, B. G. Barrell, A. J. Smith, B. A. Roe, 1980. Cloning in single-stranded bacteriophage as an aid to rapid DNA sequencing.J Mol Biol. 143: 161-78. PubMed

N. H. Woo, B. A. Roe, A. Rich, 1980. Three-dimensional structure of Escherichia coli initiator tRNAfMet.Nature. 286: 346-51. PubMed

B. G. Barrell, S. Anderson, A. T. Bankier, M. H. de Bruijn, E. Chen, A. R. Coulson, J. Drouin, I. C. Eperon, D. P. Nierlich, B. A. Roe, F. Sanger, P. H. Schreier, A. J. Smith, R. Staden, I. G. Young, 1980. Different pattern of codon recognition by mammalian mitochondrial tRNAs.Proc Natl Acad Sci U S A. 77: 3164-6. PubMed

R. C. Gupta, B. A. Roe, K. Randerath, 1980. Sequence of human glycine transfer ribonucleic acid (anticodon CCC). Determination by a newly developed thin-layer readout sequencing technique and comparison with other glycine transfer ribonucleic acids.Biochemistry. 19: 1699-705. PubMed

T. H. Rabbitts, P. H. Hamlyn, G. Matthyssens, B. A. Roe, 1980. The variability, arrangement, and rearrangement of immunoglobulin genes.Can J Biochem. 58: 176-87. PubMed


R. C. Gupta, B. A. Roe, K. Randerath, 1979. The nucleotide sequence of human tRNAGly (anticodon GCC).Nucleic Acids Res. 7: 959-70. PubMed

B. A. Roe, A. F. Stankiewicz, H. L. Rizi, C. Weisz, M. N. DiLauro, D. Pike, C. Y. Chen, E. Y. Chen, 1979. Comparison of rat liver and Walker 256 carcinosarcoma tRNAs.Nucleic Acids Res. 6: 673-88. PubMed


E. Y. Chen, B. A. Roe, 1978. The application of PEI-cellulose thin-layer chromatography for the resolution of large oligonucleotide fragments of transfer ribonucleic acids.Anal Biochem. 89: 45-59. PubMed

M. Kratovich, B. A. Roe, 1978. Improved separation of nucleosides, nucleotides, and aminoacyl tRNA a strong anion-exchange resin.J Chromatogr. 155: 407-13. PubMed

E. Y. Chen, B. A. Roe, 1978. The nucleotide sequence of rat liver tRNAAsn.Biochem Biophys Res Commun. 82: 235-46. PubMed


E. Y. Chen, B. A. Roe, 1977. A two-dimensional thin layer chromatographic procedure for the sequential analysis of oligonucleotides employing tritium post-labeling.Nucleic Acids Res. 4: 3563-72. PubMed

E. Y. Chen, B. A. Roe, 1977. Sequence studies on human placenta tRNAVal : comparison with the mouse myeloma tRNAVal.Biochem Biophys Res Commun. 78: 631-40. PubMed

B. A. Roe, H. Y. Tsen, 1977. Role of ribothymidine in mammalian tRNAPhe.Proc Natl Acad Sci U S A. 74: 3696-700. PubMed

B. A. Roe, A. F. Stankiewicz, C. Y. Chen, 1977. Chromatographic behavior of several mammalian tRNAs on acylated dihydroxyl-borate cellulose and Aminex A-28.Nucleic Acids Res. 4: 2191-204. PubMed


B. A. Roe, E. Y. Chen, H. Y. Tsen, 1976. Studies on the ribothymidine content of specific rat and human tRNAs: a postulated role for 5-methyl cytosine in the regulation of ribothymidine biosynthesis.Biochem Biophys Res Commun. 68: 1339-47. PubMed


M. P. Amandaraj, B. A. Roe, 1975. Purification of human placenta phenylalanine, valine, methionine, glucine, and serine transfer ribonucleic acids.Biochemistry. 14: 5068-73. PubMed

A. M. Gillum, B. A. Roe, M. P. Anandaraj, U. L. RajBhandary, 1975. Nucleotide sequence of human placenta cytoplasmic initiator tRNA.Cell. 6: 407-13. PubMed

B. A. Roe, M. P. Anandaraj, L. S. Chia, E. Randerath, R. C. Gupta, K. Randerath, 1975. Sequence studies on tRNAPhe from placenta: comparison with known sequences of tRNAPhe from other normal mammalian tissues.Biochem Biophys Res Commun. 66: 1097-105. PubMed

B. A. Roe, 1975. Studies on human tRNA. I. The rapid, large scale isolation and partial fractionation of placenta and liver tRNA.Nucleic Acids Res. 2: 21-42. PubMed